UHGV-2075492

Genome information

Genome length 19,518 bps

CDS count 31

Completeness 99.90% (high-quality)

geNomad score 0.9647

Prediction confidence Confident

Genome information
Genome ID	UHGV-2075492
vOTU ID	vOTU-067321
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029425\|Ga0243935_100728\|provirus_8891_28408
BioSample	SAMN05971647
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9647
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.75
Jumbo phage	No

Genome content
Genome length	19,518 bps
GC content	39.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	85.85%
Average CDS length	543.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2075492_1	KOfam	K14059	int; integrase	NA
UHGV-2075492_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2075492_1	UniRef90	UniRef90_A0A174EDH2	Integrase	NA
UHGV-2075492_1	eggNOG-mapper	97139.C824_02830	Belongs to the 'phage' integrase family	NA
UHGV-2075492_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2075492_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2075492_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2075492_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2075492_7	eggNOG-mapper	411459.RUMOBE_01397	NA	NA
UHGV-2075492_8	PHROG	phrog_13890	NA	unknown function
UHGV-2075492_8	UniRef90	UniRef90_W1I5S7	Uncultured bacterium extrachromosomal DNA RGI00099	NA
UHGV-2075492_8	eggNOG-mapper	411459.RUMOBE_01396	NA	NA
UHGV-2075492_8	Structural annotation	PF10723, NF010256, COG4877	NA	NA
UHGV-2075492_9	eggNOG-mapper	411459.RUMOBE_01395	NA	NA
UHGV-2075492_10	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-2075492_10	UniRef90	UniRef90_UPI001EDCCFB6	phage minor capsid protein	NA
UHGV-2075492_10	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-2075492_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2075492_10	Structural annotation	PF06152	NA	NA
UHGV-2075492_11	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-2075492_11	UniRef90	UniRef90_A5ZQW4	Phage regulatory protein, Rha family	NA
UHGV-2075492_11	eggNOG-mapper	411459.RUMOBE_01391	NA	NA
UHGV-2075492_11	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2075492_11	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2075492_11	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2075492_11	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2075492_12	UniRef90	UniRef90_UPI0009C032EA	helix-turn-helix domain-containing protein	NA
UHGV-2075492_12	eggNOG-mapper	411459.RUMOBE_01390	NA	NA
UHGV-2075492_13	Structural annotation	PF20794	NA	NA
UHGV-2075492_16	eggNOG-mapper	1211814.CAPG01000097_gene4376	NA	NA
UHGV-2075492_17	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-2075492_18	PHROG	phrog_28918	NA	unknown function
UHGV-2075492_18	UniRef90	UniRef90_A0A174LLY7	Phage-related protein	NA
UHGV-2075492_18	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-2075492_18	COG	COG5412	Phage-related protein	NA
UHGV-2075492_19	PHROG	phrog_706	NA	unknown function
UHGV-2075492_19	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-2075492_19	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-2075492_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2075492_19	Structural annotation	PF06854	NA	NA
UHGV-2075492_20	PHROG	phrog_11299	NA	unknown function
UHGV-2075492_20	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-2075492_20	Structural annotation	PF10666	NA	NA
UHGV-2075492_22	eggNOG-mapper	397291.C804_06335	NA	NA
UHGV-2075492_24	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2075492_24	UniRef90	UniRef90_A0A414IZC5	Toprim domain-containing protein	NA
UHGV-2075492_24	eggNOG-mapper	397290.C810_05176	Virulence-associated protein E	NA
UHGV-2075492_24	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2075492_24	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2075492_24	Structural annotation	PF05272, PF12965, MF_04154, NF005477, COG5545, COG4643	NA	NA
UHGV-2075492_25	eggNOG-mapper	1298920.KI911353_gene2059	NA	NA
UHGV-2075492_25	Structural annotation	PF08220, TIGR00122, COG1654	NA	NA
UHGV-2075492_26	UniRef90	UniRef90_UPI0011DD92B8	NA	NA
UHGV-2075492_26	Pfam	PF20063	NA	DUF6462
UHGV-2075492_26	Structural annotation	PF20063, TIGR01764, COG3311	NA	NA
UHGV-2075492_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2075492_27	UniRef90	UniRef90_A0A454HE20	XRE family transcriptional regulator	NA
UHGV-2075492_27	eggNOG-mapper	411459.RUMOBE_01372	NA	NA
UHGV-2075492_27	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2075492_28	PHROG	phrog_1762	NA	unknown function
UHGV-2075492_28	UniRef90	UniRef90_UPI001D08605B	NA	NA
UHGV-2075492_28	eggNOG-mapper	1249975.JQLP01000005_gene1091	NA	NA
UHGV-2075492_28	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-2075492_30	COG	COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	NA
UHGV-2075492_31	KOfam	K07076	NA	NA
UHGV-2075492_31	UniRef90	UniRef90_D4LSX0	Nucleotidyltransferase domain	NA
UHGV-2075492_31	eggNOG-mapper	1121115.AXVN01000001_gene1092	Nucleotidyltransferase domain	NA
UHGV-2075492_31	Pfam	PF01909	Nucleotidyltransferase domain	NTP_transf_2
UHGV-2075492_31	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA