UHGV-2075930

Genome information

Genome length 38,916 bps

CDS count 52

Completeness 81.69% (medium-quality)

geNomad score 0.9640

Prediction confidence Confident

Genome information
Genome ID	UHGV-2075930
vOTU ID	vOTU-041651
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029412\|Ga0243915_100638\|provirus_11694_50609
BioSample	SAMN05971627
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9640
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.31
Jumbo phage	No

Genome content
Genome length	38,916 bps
GC content	54.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	88.18%
Average CDS length	664.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2075930_1	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2075930_1	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2075930_1	UniRef90	UniRef90_UPI001C3B62EA	DNA adenine methylase	NA
UHGV-2075930_1	eggNOG-mapper	411471.SUBVAR_06973	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2075930_1	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-2075930_1	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2075930_1	COG	COG0338	DNA-adenine methylase	NA
UHGV-2075930_1	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-2075930_2	PHROG	phrog_13256	NA	unknown function
UHGV-2075930_2	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-2075930_3	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-2075930_3	PHROG	phrog_14988	peptidase	other
UHGV-2075930_3	UniRef90	UniRef90_A0A2V2FF85	Peptidase M23	NA
UHGV-2075930_3	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-2075930_3	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2075930_3	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2075930_3	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-2075930_5	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2075930_5	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2075930_5	UniRef90	UniRef90_A0A348T010	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2075930_5	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2075930_5	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2075930_5	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-2075930_6	PHROG	phrog_17147	NA	unknown function
UHGV-2075930_6	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-2075930_7	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-2075930_7	Structural annotation	PF10651	NA	NA
UHGV-2075930_9	PHROG	phrog_18725	NA	unknown function
UHGV-2075930_9	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-2075930_10	PHROG	phrog_13879	NA	unknown function
UHGV-2075930_10	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-2075930_10	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2075930_11	PHROG	phrog_1194	NA	unknown function
UHGV-2075930_11	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-2075930_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2075930_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2075930_12	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-2075930_12	COG	COG1511	NA	NA
UHGV-2075930_13	PHROG	phrog_706	NA	unknown function
UHGV-2075930_13	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-2075930_13	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-2075930_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2075930_13	Structural annotation	PF06854	NA	NA
UHGV-2075930_14	PHROG	phrog_11299	NA	unknown function
UHGV-2075930_14	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-2075930_14	Structural annotation	PF10666	NA	NA
UHGV-2075930_15	PHROG	phrog_3099	NA	unknown function
UHGV-2075930_15	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-2075930_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2075930_16	PHROG	phrog_3266	tail completion	connector
UHGV-2075930_16	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-2075930_16	Structural annotation	PF08873	NA	NA
UHGV-2075930_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2075930_17	UniRef90	UniRef90_UPI001967B4B3	minor capsid protein	NA
UHGV-2075930_17	eggNOG-mapper	999411.HMPREF1092_03318	Minor capsid protein	NA
UHGV-2075930_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2075930_17	Structural annotation	PF11114	NA	NA
UHGV-2075930_18	Structural annotation	PF20536	NA	NA
UHGV-2075930_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-2075930_21	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2075930_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2075930_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2075930_22	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-2075930_22	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-2075930_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2075930_22	Structural annotation	PF06810	NA	NA
UHGV-2075930_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2075930_25	UniRef90	UniRef90_UPI00196795ED	phage minor capsid protein	NA
UHGV-2075930_25	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-2075930_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2075930_25	COG	COG2369	NA	NA
UHGV-2075930_25	Structural annotation	PF06152, PF07737, TIGR01641, COG2369	NA	NA
UHGV-2075930_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-2075930_26	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-2075930_26	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-2075930_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2075930_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2075930_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2075930_28	UniRef90	UniRef90_A0A6N8H4Y1	PBSX family phage terminase large subunit	NA
UHGV-2075930_28	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-2075930_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2075930_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2075930_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2075930_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2075930_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2075930_30	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-2075930_30	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-2075930_30	UniRef90	UniRef90_A0A6N8H0F4	NGN domain-containing protein	NA
UHGV-2075930_30	eggNOG-mapper	411471.SUBVAR_07000	Transcription termination factor nusG	NA
UHGV-2075930_30	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-2075930_30	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-2075930_30	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-2075930_31	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-2075930_31	UniRef90	UniRef90_A0A6N8H2N8	NA	NA
UHGV-2075930_31	eggNOG-mapper	411471.SUBVAR_07001	NA	NA
UHGV-2075930_31	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-2075930_31	Structural annotation	PF11985	NA	NA
UHGV-2075930_32	PHROG	phrog_25462	NA	unknown function
UHGV-2075930_32	UniRef90	UniRef90_A0A6N8H1D3	Type VI secretion protein	NA
UHGV-2075930_32	eggNOG-mapper	742733.HMPREF9469_02885	NA	NA
UHGV-2075930_32	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-2075930_33	PHROG	phrog_462	lipoprotein	other
UHGV-2075930_33	eggNOG-mapper	411471.SUBVAR_07003	NA	NA
UHGV-2075930_34	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-2075930_34	UniRef90	UniRef90_A0A6N8H2N1	DNA-binding protein	NA
UHGV-2075930_34	eggNOG-mapper	411471.SUBVAR_07004	Mor transcription activator	NA
UHGV-2075930_34	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-2075930_34	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-2075930_34	Structural annotation	PF08765, COG5566	NA	NA
UHGV-2075930_35	PHROG	phrog_286	NA	unknown function
UHGV-2075930_35	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-2075930_35	eggNOG-mapper	411471.SUBVAR_07005	NA	NA
UHGV-2075930_35	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-2075930_35	Structural annotation	PF06252	NA	NA
UHGV-2075930_37	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2075930_37	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-2075930_37	eggNOG-mapper	411471.SUBVAR_07006	Bacteriophage Mu Gam like protein	NA
UHGV-2075930_37	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-2075930_37	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-2075930_37	Structural annotation	PF07352, COG4396	NA	NA
UHGV-2075930_38	PHROG	phrog_5671	NA	unknown function
UHGV-2075930_38	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-2075930_40	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-2075930_40	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2075930_40	UniRef90	UniRef90_A0A6N8H4X2	ATP-binding protein	NA
UHGV-2075930_40	eggNOG-mapper	411471.SUBVAR_07009	AAA domain	NA
UHGV-2075930_40	Pfam	PF13401	AAA domain	AAA_22
UHGV-2075930_40	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2075930_41	PHROG	phrog_310	transposase	integration and excision
UHGV-2075930_41	UniRef90	UniRef90_A0A6N8H399	MerR family transcriptional regulator	NA
UHGV-2075930_41	eggNOG-mapper	411471.SUBVAR_07010	Mu transposase, C-terminal	NA
UHGV-2075930_41	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-2075930_41	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-2075930_41	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2075930_41	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-2075930_46	UniRef90	UniRef90_UPI000AE5279C	helix-turn-helix transcriptional regulator	NA
UHGV-2075930_46	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2075930_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2075930_46	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2075930_48	eggNOG-mapper	1235790.C805_03665	NA	NA
UHGV-2075930_48	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-2075930_49	PHROG	phrog_12156	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2075930_49	UniRef90	UniRef90_UPI001C3BB96D	Putative DNA binding domain-containing protein	NA
UHGV-2075930_49	eggNOG-mapper	1384065.JAGS01000001_gene3244	Putative DNA-binding domain	NA
UHGV-2075930_49	Pfam	PF04326	Schlafen, AlbA_2	SLFN_AlbA_2
UHGV-2075930_49	Pfam	PF13749	Putative ATP-dependent DNA helicase recG C-terminal	HATPase_c_4
UHGV-2075930_49	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-2075930_49	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-2075930_49	Structural annotation	PF04703, MF_01819, NF033788, NF033091, COG2865	NA	NA
UHGV-2075930_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2075930_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2075930_50	UniRef90	UniRef90_A0A1Q6KS88	HTH cro/C1-type domain-containing protein	NA
UHGV-2075930_50	eggNOG-mapper	1232453.BAIF02000039_gene3532	NA	NA
UHGV-2075930_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2075930_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2075930_50	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2075930_51	UniRef90	UniRef90_A0A1T4Y0J5	DNA binding domain-containing protein, excisionase family	NA
UHGV-2075930_51	eggNOG-mapper	411471.SUBVAR_06580	Helix-turn-helix domain	NA
UHGV-2075930_51	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2075930_52	eggNOG-mapper	411471.SUBVAR_06583	Relaxase/Mobilisation nuclease domain	NA
UHGV-2075930_52	COG	COG3843	Type IV secretory pathway, VirD2 component (relaxase)	NA