UHGV-2075939

Genome information

vOTU vOTU-019591

Genome length 35,427 bps

CDS count 59

Completeness 78.07% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-2075939
vOTU ID	vOTU-019591
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029412\|Ga0243915_100395\|provirus_35844_71270
BioSample	SAMN05971627
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.22
Jumbo phage	No

Genome content
Genome length	35,427 bps
GC content	48.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	95.99%
Average CDS length	582.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2075939_1	PHROG	phrog_37316	NA	unknown function
UHGV-2075939_1	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-2075939_2	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-2075939_2	PHROG	phrog_822	amidase	lysis
UHGV-2075939_2	UniRef90	UniRef90_UPI001D074C51	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2075939_2	eggNOG-mapper	568816.Acin_1215	Ami_2	NA
UHGV-2075939_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2075939_2	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2075939_2	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2075939_3	PHROG	phrog_27828	NA	unknown function
UHGV-2075939_3	eggNOG-mapper	1401067.HMPREF0872_03360	NA	NA
UHGV-2075939_5	KOfam	K14059	int; integrase	NA
UHGV-2075939_5	PHROG	phrog_1	integrase	integration and excision
UHGV-2075939_5	UniRef90	UniRef90_UPI001D06BF58	tyrosine-type recombinase/integrase	NA
UHGV-2075939_5	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-2075939_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2075939_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2075939_5	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2075939_6	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-2075939_6	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2075939_8	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-2075939_8	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-2075939_8	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2075939_10	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-2075939_12	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2075939_12	UniRef90	UniRef90_UPI00041FA215	phage tail protein	NA
UHGV-2075939_12	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-2075939_12	COG	COG4675	Phage tail collar domain	NA
UHGV-2075939_12	Structural annotation	PF12571, MF_04106, COG5301	NA	NA
UHGV-2075939_13	PHROG	phrog_521	tail protein	tail
UHGV-2075939_13	UniRef90	UniRef90_UPI001D07DFAB	YmfQ family protein	NA
UHGV-2075939_13	eggNOG-mapper	1449050.JNLE01000005_gene4830	NA	NA
UHGV-2075939_13	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2075939_13	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2075939_13	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2075939_14	PHROG	phrog_6	baseplate protein	tail
UHGV-2075939_14	UniRef90	UniRef90_UPI001D090E33	baseplate J/gp47 family protein	NA
UHGV-2075939_14	eggNOG-mapper	1123511.KB905868_gene166	Baseplate J-like protein	NA
UHGV-2075939_14	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2075939_14	COG	COG3299	NA	NA
UHGV-2075939_14	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2075939_15	PHROG	phrog_120	baseplate protein	tail
UHGV-2075939_15	UniRef90	UniRef90_UPI001D05FF61	NA	NA
UHGV-2075939_15	eggNOG-mapper	1123511.KB905868_gene167	NA	NA
UHGV-2075939_15	Pfam	PF10934	NA	DUF2634
UHGV-2075939_15	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2075939_15	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-2075939_16	PHROG	phrog_579	NA	unknown function
UHGV-2075939_16	UniRef90	UniRef90_UPI001D07A85E	NA	NA
UHGV-2075939_16	eggNOG-mapper	1123511.KB905868_gene168	NA	NA
UHGV-2075939_16	Pfam	PF10844	NA	DUF2577
UHGV-2075939_16	Structural annotation	PF10844, COG0186	NA	NA
UHGV-2075939_17	PHROG	phrog_400	tail protein	tail
UHGV-2075939_17	UniRef90	UniRef90_A0A6L6TN73	Hydrolase	NA
UHGV-2075939_17	eggNOG-mapper	1123511.KB905868_gene169	PFAM Phage late control gene D protein (GPD)	NA
UHGV-2075939_17	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-2075939_17	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2075939_18	PHROG	phrog_380	endolysin	lysis
UHGV-2075939_18	UniRef90	UniRef90_A0A4R1PW24	LysM domain-containing protein	NA
UHGV-2075939_18	eggNOG-mapper	1123511.KB905868_gene170	PFAM LysM domain	NA
UHGV-2075939_18	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2075939_18	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-2075939_19	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-2075939_19	UniRef90	UniRef90_UPI001D096802	tape measure protein	NA
UHGV-2075939_19	eggNOG-mapper	546273.VEIDISOL_00724	tape measure	NA
UHGV-2075939_19	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2075939_19	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2075939_19	COG	COG5281	Phage-related minor tail protein	NA
UHGV-2075939_19	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2075939_20	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2075939_20	UniRef90	UniRef90_R5SN61	XkdN-like protein	NA
UHGV-2075939_20	eggNOG-mapper	1111454.HMPREF1250_0166	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2075939_20	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2075939_20	Structural annotation	PF08890, COG4518	NA	NA
UHGV-2075939_21	PHROG	phrog_365	tail protein	tail
UHGV-2075939_21	UniRef90	UniRef90_UPI001D068A7F	phage tail tube protein	NA
UHGV-2075939_21	eggNOG-mapper	1111454.HMPREF1250_0167	Phage tail tube protein	NA
UHGV-2075939_21	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2075939_21	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-2075939_22	PHROG	phrog_279	tail sheath	tail
UHGV-2075939_22	UniRef90	UniRef90_UPI001D08667C	phage tail sheath family protein	NA
UHGV-2075939_22	eggNOG-mapper	546273.VEIDISOL_00720	Phage tail sheath C-terminal domain	NA
UHGV-2075939_22	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-2075939_22	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2075939_22	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2075939_22	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-2075939_24	PHROG	phrog_525	NA	unknown function
UHGV-2075939_24	eggNOG-mapper	546273.VEIDISOL_01062	NA	NA
UHGV-2075939_24	Pfam	PF20765	NA	DUF6838
UHGV-2075939_24	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2075939_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2075939_25	UniRef90	UniRef90_UPI001D06F932	HK97 gp10 family phage protein	NA
UHGV-2075939_25	eggNOG-mapper	546273.VEIDISOL_01061	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2075939_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2075939_26	PHROG	phrog_615	head-tail adaptor	connector
UHGV-2075939_26	eggNOG-mapper	1111454.HMPREF1250_0172	NA	NA
UHGV-2075939_26	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-2075939_27	eggNOG-mapper	1111454.HMPREF1250_0173	NA	NA
UHGV-2075939_27	Structural annotation	PF05135	NA	NA
UHGV-2075939_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-2075939_29	UniRef90	UniRef90_R5BRS0	Lj928 prophage protein	NA
UHGV-2075939_29	eggNOG-mapper	1123489.AUAN01000010_gene359	NA	NA
UHGV-2075939_29	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2075939_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2075939_30	UniRef90	UniRef90_UPI001D078FD1	phage scaffolding protein	NA
UHGV-2075939_30	eggNOG-mapper	1111454.HMPREF1250_0176	Phage minor structural protein GP20	NA
UHGV-2075939_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2075939_30	Structural annotation	PF06810	NA	NA
UHGV-2075939_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2075939_32	UniRef90	UniRef90_UPI001D06CDF6	minor capsid protein	NA
UHGV-2075939_32	eggNOG-mapper	1111454.HMPREF1250_0178	Phage Mu protein F like protein	NA
UHGV-2075939_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2075939_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2075939_32	COG	COG2369	NA	NA
UHGV-2075939_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2075939_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-2075939_33	UniRef90	UniRef90_UPI001D072032	phage portal protein	NA
UHGV-2075939_33	eggNOG-mapper	546273.VEIDISOL_00711	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2075939_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2075939_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2075939_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2075939_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2075939_34	UniRef90	UniRef90_UPI001D088A8F	PBSX family phage terminase large subunit	NA
UHGV-2075939_34	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-2075939_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2075939_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2075939_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2075939_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-2075939_34	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-2075939_34	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2075939_36	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-2075939_36	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-2075939_36	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-2075939_36	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-2075939_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2075939_37	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2075939_37	UniRef90	UniRef90_A0A1Y4VGE1	DNA methylase	NA
UHGV-2075939_37	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-2075939_37	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2075939_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2075939_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2075939_37	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-2075939_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2075939_38	eggNOG-mapper	568816.Acin_1244	NA	NA
UHGV-2075939_38	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2075939_42	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2075939_42	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2075939_42	UniRef90	UniRef90_G4Q3Z3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-2075939_42	eggNOG-mapper	568816.Acin_1848	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-2075939_42	Pfam	PF00692	dUTPase	dUTPase
UHGV-2075939_42	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2075939_46	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-2075939_48	PHROG	phrog_236	nucleotide kinase	other
UHGV-2075939_48	UniRef90	UniRef90_UPI001D087B9E	NA	NA
UHGV-2075939_48	eggNOG-mapper	997830.HMPREF1124_0590	NA	NA
UHGV-2075939_48	Pfam	PF11753	NA	DUF3310
UHGV-2075939_48	Structural annotation	PF11753	NA	NA
UHGV-2075939_49	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2075939_49	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-2075939_49	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-2075939_49	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2075939_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2075939_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2075939_50	UniRef90	UniRef90_UPI001D0945B1	single-stranded DNA-binding protein	NA
UHGV-2075939_50	eggNOG-mapper	591001.Acfer_0039	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2075939_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2075939_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2075939_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2075939_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2075939_50	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2075939_53	KOfam	K11144	dnaI; primosomal protein DnaI	NA
UHGV-2075939_53	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2075939_53	UniRef90	UniRef90_UPI001D085F29	ATP-binding protein	NA
UHGV-2075939_53	eggNOG-mapper	585503.HMPREF7545_1719	IstB-like ATP binding protein	NA
UHGV-2075939_53	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2075939_53	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2075939_53	Structural annotation	PF01695, MF_01158, NF006505, COG1484	NA	NA
UHGV-2075939_54	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2075939_54	UniRef90	UniRef90_UPI001D083777	DnaD domain protein	NA
UHGV-2075939_54	eggNOG-mapper	1123489.AUAN01000002_gene950	DnaD domain protein	NA
UHGV-2075939_54	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2075939_54	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2075939_54	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2075939_54	Structural annotation	PF09524, PF21312, MF_01819, TIGR02220, NF033788, COG5529	NA	NA
UHGV-2075939_55	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2075939_55	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-2075939_55	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-2075939_55	Structural annotation	PF05772	NA	NA
UHGV-2075939_56	PHROG	phrog_7566	NA	unknown function
UHGV-2075939_56	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-2075939_56	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-2075939_57	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2075939_57	UniRef90	UniRef90_UPI001D0609B9	ERF family protein	NA
UHGV-2075939_57	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-2075939_57	Pfam	PF04404	ERF superfamily	ERF
UHGV-2075939_57	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2075939_58	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2075939_58	UniRef90	UniRef90_UPI001D0833C6	host-nuclease inhibitor Gam family protein	NA
UHGV-2075939_58	eggNOG-mapper	568816.Acin_1854	Bacteriophage Mu Gam like protein	NA
UHGV-2075939_58	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-2075939_58	Structural annotation	PF07352	NA	NA