UHGV-2076821

Genome information

Genome length 35,639 bps

CDS count 49

Completeness 97.07% (high-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-2076821
vOTU ID	vOTU-009155
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029394\|Ga0243997_1000255\|provirus_47509_83147
BioSample	SAMN05971709
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.07% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.6
Jumbo phage	No

Genome content
Genome length	35,639 bps
GC content	47.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.04%
Average CDS length	679.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2076821_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2076821_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2076821_1	UniRef90	UniRef90_A0A6G3M4R6	Recombinase family protein	NA
UHGV-2076821_1	eggNOG-mapper	1120746.CCNL01000014_gene2079	Recombinase	NA
UHGV-2076821_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2076821_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2076821_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2076821_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2076821_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2076821_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2076821_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2076821_2	UniRef90	UniRef90_W0U6I9	HicB-like domain-containing protein	NA
UHGV-2076821_2	eggNOG-mapper	1160721.RBI_I01717	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2076821_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2076821_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2076821_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2076821_3	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2076821_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2076821_3	UniRef90	UniRef90_R6R5J3	Toxin-antitoxin system toxin component HicA family	NA
UHGV-2076821_3	eggNOG-mapper	519989.ECTPHS_07282	periplasmic or secreted lipoprotein	NA
UHGV-2076821_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2076821_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2076821_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2076821_4	KOfam	K11641	natR; two-component system, LytTR family, response regulator NatR	NA
UHGV-2076821_4	PHROG	phrog_8810	NA	unknown function
UHGV-2076821_4	UniRef90	UniRef90_A0A352TI42	Stage 0 sporulation protein A homolog	NA
UHGV-2076821_4	eggNOG-mapper	1140002.I570_02751	LytTr DNA-binding domain	NA
UHGV-2076821_4	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-2076821_4	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-2076821_4	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-2076821_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2076821_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2076821_5	UniRef90	UniRef90_R7F9Y3	Transcriptional regulator	NA
UHGV-2076821_5	eggNOG-mapper	1094508.Tsac_0840	transcriptional regulator, XRE family	NA
UHGV-2076821_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2076821_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2076821_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2076821_6	PHROG	phrog_17486	NA	unknown function
UHGV-2076821_6	Structural annotation	PF04314, NF041740, COG2847	NA	NA
UHGV-2076821_8	Structural annotation	MF_00273	NA	NA
UHGV-2076821_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2076821_10	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2076821_10	UniRef90	UniRef90_UPI001C0D97C0	phage antirepressor KilAC domain-containing protein	NA
UHGV-2076821_10	eggNOG-mapper	1027292.HMPREF9372_1278	BRO family, N-terminal domain	NA
UHGV-2076821_10	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2076821_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2076821_10	COG	COG3617	Prophage antirepressor	NA
UHGV-2076821_10	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-2076821_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2076821_14	UniRef90	UniRef90_UPI001D027D24	helix-turn-helix domain-containing protein	NA
UHGV-2076821_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2076821_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2076821_15	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2076821_15	UniRef90	UniRef90_A0A843H8D6	ATP-binding protein	NA
UHGV-2076821_15	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-2076821_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-2076821_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2076821_16	PHROG	phrog_18107	NA	unknown function
UHGV-2076821_16	UniRef90	UniRef90_R7F806	PF05037 family protein	NA
UHGV-2076821_16	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-2076821_17	PHROG	phrog_16304	NA	unknown function
UHGV-2076821_17	UniRef90	UniRef90_R7FEB6	NA	NA
UHGV-2076821_17	eggNOG-mapper	1105031.HMPREF1141_0552	NA	NA
UHGV-2076821_17	Pfam	PF19808	NA	DUF6291
UHGV-2076821_17	Structural annotation	PF19808	NA	NA
UHGV-2076821_18	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-2076821_18	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2076821_18	UniRef90	UniRef90_R6P3P1	SF4 helicase domain-containing protein	NA
UHGV-2076821_18	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-2076821_18	Pfam	PF13481	AAA domain	AAA_25
UHGV-2076821_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-2076821_18	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-2076821_20	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2076821_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2076821_20	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-2076821_20	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2076821_20	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2076821_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2076821_20	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-2076821_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2076821_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2076821_20	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2076821_21	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2076821_21	UniRef90	UniRef90_UPI000A4B1865	VRR-NUC domain-containing protein	NA
UHGV-2076821_21	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-2076821_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2076821_21	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-2076821_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2076821_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2076821_25	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2076821_25	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-2076821_25	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-2076821_27	UniRef90	UniRef90_A0A843H1D7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2076821_27	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-2076821_27	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2076821_27	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-2076821_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2076821_28	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-2076821_28	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-2076821_28	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-2076821_28	Structural annotation	PF07141	NA	NA
UHGV-2076821_29	eggNOG-mapper	641112.ACOK01000113_gene2082	self proteolysis	NA
UHGV-2076821_29	COG	COG3209	NA	NA
UHGV-2076821_30	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-2076821_30	UniRef90	UniRef90_A0A843H3P4	HNH endonuclease	NA
UHGV-2076821_30	eggNOG-mapper	293826.Amet_2409	HNH endonuclease	NA
UHGV-2076821_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2076821_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2076821_30	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-2076821_31	PHROG	phrog_1066	NA	unknown function
UHGV-2076821_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2076821_32	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-2076821_32	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-2076821_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2076821_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2076821_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2076821_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2076821_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-2076821_33	UniRef90	UniRef90_UPI0005C7E1AD	phage portal protein	NA
UHGV-2076821_33	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-2076821_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2076821_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2076821_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2076821_34	KOfam	K06904	NA	NA
UHGV-2076821_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2076821_34	UniRef90	UniRef90_A0A6N2W9T5	Caudovirus prohead protease	NA
UHGV-2076821_34	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-2076821_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2076821_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2076821_34	COG	COG3740	Phage head maturation protease	NA
UHGV-2076821_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2076821_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-2076821_35	UniRef90	UniRef90_A0A1M6DQ36	Phage major capsid protein, HK97 family	NA
UHGV-2076821_35	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2076821_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2076821_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2076821_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2076821_35	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2076821_36	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-2076821_36	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-2076821_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2076821_37	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-2076821_37	eggNOG-mapper	1157490.EL26_20700	NA	NA
UHGV-2076821_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2076821_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2076821_38	Structural annotation	TIGR01725	NA	NA
UHGV-2076821_39	Structural annotation	PF05657	NA	NA
UHGV-2076821_40	PHROG	phrog_88	major tail protein	tail
UHGV-2076821_40	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-2076821_40	eggNOG-mapper	66692.ABC1339	phage major tail protein, phi13 family	NA
UHGV-2076821_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2076821_40	COG	COG5492	NA	NA
UHGV-2076821_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2076821_42	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2076821_42	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-2076821_42	COG	COG5412	Phage-related protein	NA
UHGV-2076821_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2076821_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2076821_43	UniRef90	UniRef90_A0A6N2W6N8	Phage tail protein	NA
UHGV-2076821_43	eggNOG-mapper	665950.HMPREF1025_02008	Phage tail protein	NA
UHGV-2076821_43	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2076821_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-2076821_43	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-2076821_44	PHROG	phrog_538	minor tail protein	tail
UHGV-2076821_44	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2076821_44	eggNOG-mapper	742733.HMPREF9469_05018	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-2076821_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2076821_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2076821_45	PHROG	phrog_1220	head protein	head and packaging
UHGV-2076821_45	eggNOG-mapper	1145276.T479_12190	NA	NA
UHGV-2076821_45	Structural annotation	PF20747	NA	NA
UHGV-2076821_47	PHROG	phrog_443	holin	lysis
UHGV-2076821_47	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-2076821_47	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-2076821_47	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2076821_47	Structural annotation	PF16945	NA	NA
UHGV-2076821_48	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2076821_48	PHROG	phrog_1794	amidase	lysis
UHGV-2076821_48	UniRef90	UniRef90_A0A374VU40	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2076821_48	eggNOG-mapper	411473.RUMCAL_00096	Ami_2	NA
UHGV-2076821_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2076821_48	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2076821_48	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-2076821_49	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2076821_49	UniRef90	UniRef90_UPI001D006529	Abi family protein	NA
UHGV-2076821_49	eggNOG-mapper	888746.HMPREF9180_0753	Abi-like protein	NA
UHGV-2076821_49	PADLOC	AbiD	AbiD	Abi
UHGV-2076821_49	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2076821_49	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2076821_49	Structural annotation	PF07751, COG4823	NA	NA