UHGV-2077033

Genome information

Genome length 35,756 bps

CDS count 37

Completeness 75.11% (medium-quality)

geNomad score 0.9519

Prediction confidence Confident

Genome information
Genome ID	UHGV-2077033
vOTU ID	vOTU-017349
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029381\|Ga0243902_1000821\|provirus_1_35756
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9519
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.23
Jumbo phage	No

Genome content
Genome length	35,756 bps
GC content	47.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.27%
Average CDS length	895.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2077033_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2077033_1	UniRef90	UniRef90_A0A1K1YL55	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2077033_1	eggNOG-mapper	1384066.JAGT01000001_gene941	large subunit	NA
UHGV-2077033_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2077033_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2077033_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2077033_1	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2077033_2	eggNOG-mapper	411473.RUMCAL_01614	NA	NA
UHGV-2077033_3	PHROG	phrog_3777	NA	unknown function
UHGV-2077033_3	UniRef90	UniRef90_UPI001D004CDA	NA	NA
UHGV-2077033_3	eggNOG-mapper	411473.RUMCAL_03423	NA	NA
UHGV-2077033_3	Pfam	PF12957	NA	DUF3846
UHGV-2077033_3	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-2077033_3	Structural annotation	PF12957	NA	NA
UHGV-2077033_4	PHROG	phrog_2945	NA	unknown function
UHGV-2077033_4	UniRef90	UniRef90_R6RDL5	(NiFe) hydrogenase maturation protein HypF	NA
UHGV-2077033_4	eggNOG-mapper	1235799.C818_01022	NA	NA
UHGV-2077033_5	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-2077033_5	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2077033_5	UniRef90	UniRef90_UPI001D0182E8	gamma-glutamylcyclotransferase	NA
UHGV-2077033_5	eggNOG-mapper	1410670.JHXF01000015_gene2284	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-2077033_5	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-2077033_5	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2077033_5	Structural annotation	PF06094, COG2105	NA	NA
UHGV-2077033_6	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2077033_6	UniRef90	UniRef90_A0A374VLD6	Alpha-L-fucosidase	NA
UHGV-2077033_6	eggNOG-mapper	665956.HMPREF1032_02273	Putative amidoligase enzyme	NA
UHGV-2077033_6	AcrCatalog	cluster_16277	NA	NA
UHGV-2077033_6	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2077033_6	Structural annotation	PF12224	NA	NA
UHGV-2077033_7	PHROG	phrog_3782	NA	unknown function
UHGV-2077033_7	UniRef90	UniRef90_UPI001D01E7D2	NA	NA
UHGV-2077033_7	eggNOG-mapper	411473.RUMCAL_00591	NA	NA
UHGV-2077033_7	Pfam	PF14192	NA	DUF4314
UHGV-2077033_7	Structural annotation	PF14192, MF_00754, NF007106	NA	NA
UHGV-2077033_8	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2077033_8	UniRef90	UniRef90_UPI001D030171	virulence protein	NA
UHGV-2077033_8	eggNOG-mapper	411473.RUMCAL_02011	NA	NA
UHGV-2077033_8	AcrCatalog	cluster_14489	NA	NA
UHGV-2077033_9	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2077033_9	PHROG	phrog_38038	NA	unknown function
UHGV-2077033_9	UniRef90	UniRef90_A0A1C5SI48	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2077033_9	eggNOG-mapper	1121334.KB911068_gene2281	C-5 cytosine-specific DNA methylase	NA
UHGV-2077033_9	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2077033_9	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2077033_9	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2077033_9	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2077033_10	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2077033_10	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2077033_10	UniRef90	UniRef90_A0A1C6CJU7	Putative methylase	NA
UHGV-2077033_10	eggNOG-mapper	1384066.JAGT01000001_gene951	NA	NA
UHGV-2077033_10	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2077033_10	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2077033_10	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2077033_10	COG	COG0863	DNA modification methylase	NA
UHGV-2077033_10	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2077033_11	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2077033_11	UniRef90	UniRef90_A0A374VMN9	Terminase	NA
UHGV-2077033_11	eggNOG-mapper	1235790.C805_01775	NA	NA
UHGV-2077033_11	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2077033_11	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2077033_12	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2077033_12	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2077033_12	UniRef90	UniRef90_U2LGN3	HNH endonuclease domain protein	NA
UHGV-2077033_12	eggNOG-mapper	411473.RUMCAL_03130	HNH endonuclease	NA
UHGV-2077033_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2077033_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2077033_12	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2077033_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2077033_13	UniRef90	UniRef90_UPI000492AC93	NA	NA
UHGV-2077033_13	eggNOG-mapper	411473.RUMCAL_02613	NA	NA
UHGV-2077033_13	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2077033_14	PHROG	phrog_7024	NA	unknown function
UHGV-2077033_14	eggNOG-mapper	411473.RUMCAL_02614	NA	NA
UHGV-2077033_14	AcrCatalog	cluster_1398	NA	NA
UHGV-2077033_15	KOfam	K20093	ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-]	NA
UHGV-2077033_15	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2077033_15	UniRef90	UniRef90_U2JYA2	Protein, SNF2 family	NA
UHGV-2077033_15	eggNOG-mapper	411473.RUMCAL_02615	helicase	NA
UHGV-2077033_15	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2077033_15	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2077033_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2077033_15	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2077033_15	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2077033_16	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2077033_16	UniRef90	UniRef90_U2KG94	VRR-NUC domain protein	NA
UHGV-2077033_16	eggNOG-mapper	411473.RUMCAL_02616	VRR_NUC	NA
UHGV-2077033_16	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2077033_17	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2077033_17	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2077033_17	UniRef90	UniRef90_U2LVX8	Phage/plasmid primase, P4 family domain protein	NA
UHGV-2077033_17	eggNOG-mapper	411473.RUMCAL_02617	Phage plasmid primase, P4 family	NA
UHGV-2077033_17	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2077033_17	Pfam	PF19263	NA	DUF5906
UHGV-2077033_17	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2077033_17	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2077033_17	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-2077033_18	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2077033_18	UniRef90	UniRef90_A0A374VUF7	NA	NA
UHGV-2077033_18	eggNOG-mapper	411473.RUMCAL_02619	NA	NA
UHGV-2077033_18	Pfam	PF14359	NA	DUF4406
UHGV-2077033_18	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2077033_19	PHROG	phrog_21057	NA	unknown function
UHGV-2077033_19	eggNOG-mapper	1384066.JAGT01000001_gene961	NA	NA
UHGV-2077033_19	Structural annotation	PF13451	NA	NA
UHGV-2077033_21	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-2077033_21	UniRef90	UniRef90_U2JYA8	Phage regulatory protein, Rha family	NA
UHGV-2077033_21	eggNOG-mapper	411473.RUMCAL_02620	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2077033_21	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2077033_21	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2077033_21	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2077033_21	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2077033_22	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2077033_22	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2077033_22	UniRef90	UniRef90_U2KG99	DNA-directed DNA polymerase	NA
UHGV-2077033_22	eggNOG-mapper	411473.RUMCAL_02621	NA	NA
UHGV-2077033_22	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2077033_22	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2077033_22	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2077033_23	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2077033_23	UniRef90	UniRef90_A0A396Q0J8	NA	NA
UHGV-2077033_23	eggNOG-mapper	411473.RUMCAL_02622	NA	NA
UHGV-2077033_23	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2077033_23	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2077033_24	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2077033_24	UniRef90	UniRef90_A0A374VT23	NA	NA
UHGV-2077033_24	eggNOG-mapper	411473.RUMCAL_02623	NA	NA
UHGV-2077033_24	Pfam	PF10926	NA	DUF2800
UHGV-2077033_24	COG	COG2887	RecB family exonuclease	NA
UHGV-2077033_24	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2077033_25	PHROG	phrog_408	NA	unknown function
UHGV-2077033_25	UniRef90	UniRef90_A0A3C0QQ05	rRNA biogenesis protein rrp5	NA
UHGV-2077033_25	eggNOG-mapper	411473.RUMCAL_02624	NA	NA
UHGV-2077033_27	PHROG	phrog_13787	NA	unknown function
UHGV-2077033_27	UniRef90	UniRef90_A0A1V5XDI2	RNA polymerase sigma factor RpoE	NA
UHGV-2077033_27	eggNOG-mapper	411473.RUMCAL_02625	NA	NA
UHGV-2077033_27	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2077033_27	Structural annotation	PF13412, MF_00959, NF006146, COG1191	NA	NA
UHGV-2077033_28	eggNOG-mapper	1408422.JHYF01000022_gene1387	NA	NA
UHGV-2077033_29	eggNOG-mapper	411473.RUMCAL_02627	nucleotide-binding Protein	NA
UHGV-2077033_29	COG	COG4916	NA	NA
UHGV-2077033_30	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-2077033_30	UniRef90	UniRef90_U2LP64	DNA binding domain, excisionase family	NA
UHGV-2077033_30	eggNOG-mapper	411473.RUMCAL_02628	DNA binding domain	NA
UHGV-2077033_30	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2077033_30	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2077033_30	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2077033_30	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2077033_31	PHROG	phrog_2801	NA	unknown function
UHGV-2077033_31	UniRef90	UniRef90_U2KGR2	AAA_13 domain-containing protein	NA
UHGV-2077033_31	eggNOG-mapper	411473.RUMCAL_02629	AAA domain	NA
UHGV-2077033_31	Pfam	PF13166	AAA domain	AAA_13
UHGV-2077033_31	COG	COG4694	Wobble nucleotide-excising tRNase	NA
UHGV-2077033_31	Structural annotation	PF13166, MF_00449, TIGR03185, COG4694	NA	NA
UHGV-2077033_32	KOfam	K03580	hepA; ATP-dependent helicase HepA [EC:5.6.2.-]	NA
UHGV-2077033_32	PHROG	phrog_26785	NA	unknown function
UHGV-2077033_32	UniRef90	UniRef90_E6UCK9	Helicase domain protein	NA
UHGV-2077033_32	eggNOG-mapper	411473.RUMCAL_02630	helicase domain protein	NA
UHGV-2077033_32	PADLOC	shah_acc_0139	HKD+Snf2	CRISPR-CAS
UHGV-2077033_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2077033_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2077033_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2077033_32	Structural annotation	PF13872, PF17941, PF04364, MF_01821, MF_01917, NF038318, NF008427, COG0553, COG3886	NA	NA
UHGV-2077033_33	UniRef90	UniRef90_UPI000DE37FDF	NA	NA
UHGV-2077033_33	eggNOG-mapper	411473.RUMCAL_02631	NA	NA
UHGV-2077033_33	Pfam	PF14335	NA	DUF4391
UHGV-2077033_33	Structural annotation	PF14335	NA	NA
UHGV-2077033_34	KOfam	K07316	mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2077033_34	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2077033_34	UniRef90	UniRef90_U2LVZ6	DNA (Cytosine-5-)-methyltransferase	NA
UHGV-2077033_34	eggNOG-mapper	411473.RUMCAL_02632	PFAM DNA methylase	NA
UHGV-2077033_34	PADLOC	MTase_III_00003	Type III methyltransferase	RM
UHGV-2077033_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2077033_34	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-2077033_34	Structural annotation	PF01555, PF18273, NF008572, COG2189	NA	NA
UHGV-2077033_35	KOfam	K01156	res; type III restriction enzyme [EC:3.1.21.5]	NA
UHGV-2077033_35	PHROG	phrog_11902	NA	unknown function
UHGV-2077033_35	UniRef90	UniRef90_U2LP69	Type III restriction enzyme, res subunit	NA
UHGV-2077033_35	eggNOG-mapper	411473.RUMCAL_02633	Type III restriction	NA
UHGV-2077033_35	PADLOC	REase_III_00001	Type III restriction enzyme	RM
UHGV-2077033_35	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2077033_35	Pfam	PF19778	Endonuclease domain	RE_endonuc
UHGV-2077033_35	COG	COG3587	Restriction endonuclease, type III RM system	NA
UHGV-2077033_35	Structural annotation	PF19778, PF04851, MF_00969, MF_04160, NF012027, COG3587	NA	NA
UHGV-2077033_36	eggNOG-mapper	411473.RUMCAL_02634	Helix-hairpin-helix DNA-binding motif class 1	NA
UHGV-2077033_37	UniRef90	UniRef90_A0A6A8KFZ2	(Deoxy)nucleoside triphosphate pyrophosphohydrolase	NA
UHGV-2077033_37	eggNOG-mapper	411473.RUMCAL_02635	NA	NA