UHGV-2077566

Genome information

Genome length 13,113 bps

CDS count 20

Completeness 91.58% (high-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-2077566
vOTU ID	vOTU-062526
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029425\|Ga0243935_100720\|provirus_20066_46450
BioSample	SAMN05971647
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	2
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.41
Jumbo phage	No

Genome content
Genome length	13,113 bps
GC content	52.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	92.82%
Average CDS length	614.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2077566_2	Structural annotation	NF041070	NA	NA
UHGV-2077566_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2077566_4	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-2077566_4	COG	COG1511	NA	NA
UHGV-2077566_4	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-2077566_5	PHROG	phrog_706	NA	unknown function
UHGV-2077566_5	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-2077566_5	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2077566_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2077566_5	Structural annotation	PF06854	NA	NA
UHGV-2077566_6	PHROG	phrog_11299	NA	unknown function
UHGV-2077566_6	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-2077566_6	Structural annotation	PF10666	NA	NA
UHGV-2077566_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2077566_10	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-2077566_10	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-2077566_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2077566_10	Structural annotation	PF11114	NA	NA
UHGV-2077566_12	eggNOG-mapper	1009370.ALO_17461	NA	NA
UHGV-2077566_13	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-2077566_13	UniRef90	UniRef90_UPI001F4290AF	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2077566_13	eggNOG-mapper	720554.Clocl_0693	Sigma-70, region 4	NA
UHGV-2077566_13	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-2077566_13	Structural annotation	PF07638, MF_00959, NF006147, COG0568	NA	NA
UHGV-2077566_15	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2077566_15	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2077566_15	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-2077566_15	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-2077566_15	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2077566_15	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2077566_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-2077566_15	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2077566_16	UniRef90	UniRef90_UPI0011C21CE6	NA	NA
UHGV-2077566_16	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-2077566_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2077566_16	Structural annotation	PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-2077566_17	UniRef90	UniRef90_R5S0R2	Excisionase family DNA binding domain-containing protein	NA
UHGV-2077566_17	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2077566_17	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2077566_17	COG	COG1762	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	NA
UHGV-2077566_17	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2077566_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2077566_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2077566_18	UniRef90	UniRef90_A0A3D1LDL9	HTH cro/C1-type domain-containing protein	NA
UHGV-2077566_18	eggNOG-mapper	742738.HMPREF9460_00731	Helix-turn-helix XRE-family like proteins	NA
UHGV-2077566_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2077566_19	UniRef90	UniRef90_UPI0008635DE9	NA	NA
UHGV-2077566_19	eggNOG-mapper	697281.Mahau_2936	NA	NA
UHGV-2077566_19	Pfam	PF12686	NA	DUF3800
UHGV-2077566_20	KOfam	K14059	int; integrase	NA
UHGV-2077566_20	PHROG	phrog_1	integrase	integration and excision
UHGV-2077566_20	UniRef90	UniRef90_A0A3D1X629	Site-specific integrase	NA
UHGV-2077566_20	eggNOG-mapper	693746.OBV_34810	Belongs to the 'phage' integrase family	NA
UHGV-2077566_20	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2077566_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2077566_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2077566_20	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA