UHGV-2078264

Genome information

Genome length 25,847 bps

CDS count 35

Completeness 64.92% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-2078264
vOTU ID	vOTU-041233
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029490\|Ga0244171_100140\|provirus_1_25847
BioSample	SAMEA3708576
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.71
Jumbo phage	No

Genome content
Genome length	25,847 bps
GC content	46.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	94.02%
Average CDS length	697.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2078264_1	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2078264_1	eggNOG-mapper	318464.IO99_13830	NA	NA
UHGV-2078264_2	PHROG	phrog_7566	NA	unknown function
UHGV-2078264_2	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-2078264_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2078264_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2078264_4	UniRef90	UniRef90_R5ADK0	Single-stranded DNA-binding protein	NA
UHGV-2078264_4	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-2078264_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2078264_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2078264_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2078264_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2078264_4	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-2078264_5	PHROG	phrog_11237	NA	unknown function
UHGV-2078264_5	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-2078264_6	UniRef90	UniRef90_A0A353J147	XRE family transcriptional regulator	NA
UHGV-2078264_6	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-2078264_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078264_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2078264_8	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2078264_8	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-2078264_8	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-2078264_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2078264_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2078264_9	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2078264_9	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-2078264_9	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-2078264_9	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2078264_10	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2078264_10	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-2078264_10	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-2078264_10	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2078264_10	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2078264_10	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2078264_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-2078264_11	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-2078264_11	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-2078264_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2078264_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2078264_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2078264_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2078264_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2078264_12	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2078264_12	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-2078264_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2078264_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2078264_12	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2078264_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-2078264_13	UniRef90	UniRef90_A0A1Y4BVI1	Phage major capsid protein	NA
UHGV-2078264_13	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-2078264_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2078264_13	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2078264_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2078264_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2078264_13	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2078264_14	PHROG	phrog_749	NA	unknown function
UHGV-2078264_14	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-2078264_14	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-2078264_15	PHROG	phrog_19734	NA	unknown function
UHGV-2078264_15	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-2078264_15	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-2078264_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2078264_16	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-2078264_16	Structural annotation	PF05657, COG3167	NA	NA
UHGV-2078264_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2078264_17	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-2078264_17	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-2078264_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2078264_17	Structural annotation	TIGR01725	NA	NA
UHGV-2078264_18	PHROG	phrog_88	major tail protein	tail
UHGV-2078264_18	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-2078264_18	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-2078264_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2078264_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2078264_20	eggNOG-mapper	1034347.CAHJ01000045_gene556	NA	NA
UHGV-2078264_20	Structural annotation	PF11836	NA	NA
UHGV-2078264_22	PHROG	phrog_8263	NA	unknown function
UHGV-2078264_22	UniRef90	UniRef90_UPI001D063C90	Ltp family lipoprotein	NA
UHGV-2078264_22	eggNOG-mapper	1485543.JMME01000005_gene857	NA	NA
UHGV-2078264_23	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-2078264_23	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2078264_23	UniRef90	UniRef90_R9L0T3	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-2078264_23	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-2078264_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2078264_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2078264_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2078264_24	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2078264_24	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-2078264_24	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-2078264_24	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2078264_24	COG	COG4722	Phage-related protein YomH	NA
UHGV-2078264_24	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2078264_25	PHROG	phrog_3639	minor tail protein	tail
UHGV-2078264_25	UniRef90	UniRef90_A0A396NMY3	NA	NA
UHGV-2078264_25	eggNOG-mapper	86416.Clopa_1914	NA	NA
UHGV-2078264_25	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2078264_25	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2078264_25	Structural annotation	PF10651, PF05475, NF033675, COG4935	NA	NA
UHGV-2078264_26	UniRef90	UniRef90_R5ANH3	Putative flagellar basal-body rod protein	NA
UHGV-2078264_27	PHROG	phrog_2310	NA	unknown function
UHGV-2078264_27	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-2078264_28	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2078264_28	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-2078264_28	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-2078264_28	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2078264_28	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2078264_28	COG	COG4926	Phage-related protein	NA
UHGV-2078264_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2078264_29	PHROG	phrog_937	hemolysin	other
UHGV-2078264_29	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-2078264_31	PHROG	phrog_36029	NA	unknown function
UHGV-2078264_31	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-2078264_31	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-2078264_32	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-2078264_32	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-2078264_32	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-2078264_32	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2078264_32	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-2078264_33	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2078264_33	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2078264_33	UniRef90	UniRef90_A0A374JCP2	Cobyrinic acid a,c-diamide synthase	NA
UHGV-2078264_33	eggNOG-mapper	411459.RUMOBE_03340	AAA domain	NA
UHGV-2078264_33	Pfam	PF13614	AAA domain	AAA_31
UHGV-2078264_33	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2078264_33	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-2078264_34	Structural annotation	PF19448	NA	NA
UHGV-2078264_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2078264_35	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-2078264_35	UniRef90	UniRef90_A0A417A9G4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2078264_35	eggNOG-mapper	641107.CDLVIII_0963	IrrE N-terminal-like domain	NA
UHGV-2078264_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2078264_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078264_35	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2078264_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2078264_35	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA