UHGV-2078372

Genome information

Genome length 33,040 bps

CDS count 48

Completeness 86.74% (medium-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-2078372
vOTU ID	vOTU-027808
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029507\|Ga0244816_100109\|provirus_56089_95634
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.9
Jumbo phage	No

Genome content
Genome length	33,040 bps
GC content	41.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.61%
Average CDS length	657.38 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2078372_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2078372_1	PHROG	phrog_435	endolysin	lysis
UHGV-2078372_1	UniRef90	UniRef90_UPI001BC85593	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2078372_1	eggNOG-mapper	511680.BUTYVIB_01053	N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family	NA
UHGV-2078372_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2078372_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2078372_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-2078372_2	PHROG	phrog_1048	NA	unknown function
UHGV-2078372_2	UniRef90	UniRef90_A0A417PRP3	NA	NA
UHGV-2078372_2	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2078372_2	Pfam	PF11195	NA	DUF2829
UHGV-2078372_2	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2078372_2	Structural annotation	PF11195	NA	NA
UHGV-2078372_3	PHROG	phrog_199	holin	lysis
UHGV-2078372_3	UniRef90	UniRef90_A0A173VKF9	Holin	NA
UHGV-2078372_3	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-2078372_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2078372_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2078372_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2078372_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2078372_4	PHROG	phrog_9994	NA	unknown function
UHGV-2078372_4	UniRef90	UniRef90_A0A7K3I4P1	H_lectin domain-containing protein	NA
UHGV-2078372_4	eggNOG-mapper	78345.BMERY_0866	NA	NA
UHGV-2078372_4	Structural annotation	PF20747, NF012201	NA	NA
UHGV-2078372_5	PHROG	phrog_538	minor tail protein	tail
UHGV-2078372_5	UniRef90	UniRef90_UPI001E30CCA1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2078372_5	eggNOG-mapper	411468.CLOSCI_00276	NA	NA
UHGV-2078372_5	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2078372_5	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2078372_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2078372_6	UniRef90	UniRef90_UPI001EDFA8F1	phage tail protein	NA
UHGV-2078372_6	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-2078372_6	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2078372_7	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-2078372_7	PHROG	phrog_5218	NA	unknown function
UHGV-2078372_7	UniRef90	UniRef90_A0A414U8D6	PhageMin_Tail domain-containing protein	NA
UHGV-2078372_7	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-2078372_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2078372_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2078372_7	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-2078372_9	eggNOG-mapper	411459.RUMOBE_00928	NA	NA
UHGV-2078372_10	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-2078372_10	Structural annotation	PF11836	NA	NA
UHGV-2078372_11	PHROG	phrog_88	major tail protein	tail
UHGV-2078372_11	UniRef90	UniRef90_A0A7G9G8N6	S-l_SbsC_C domain-containing protein	NA
UHGV-2078372_11	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-2078372_11	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2078372_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2078372_11	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-2078372_12	PHROG	phrog_88	major tail protein	tail
UHGV-2078372_12	UniRef90	UniRef90_A0A1C5SV91	Phage major tail protein, phi13 family	NA
UHGV-2078372_12	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-2078372_12	COG	COG5492	NA	NA
UHGV-2078372_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2078372_13	PHROG	phrog_78	tail terminator	connector
UHGV-2078372_13	eggNOG-mapper	935948.KE386495_gene1329	NA	NA
UHGV-2078372_13	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2078372_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2078372_14	UniRef90	UniRef90_UPI001D07550A	HK97 gp10 family phage protein	NA
UHGV-2078372_14	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-2078372_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2078372_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2078372_14	Structural annotation	TIGR01725	NA	NA
UHGV-2078372_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2078372_15	UniRef90	UniRef90_UPI0018ABC448	phage head closure protein	NA
UHGV-2078372_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2078372_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2078372_16	PHROG	phrog_5223	neck protein	connector
UHGV-2078372_16	UniRef90	UniRef90_UPI0017869A34	head-tail connector protein	NA
UHGV-2078372_16	eggNOG-mapper	1203606.HMPREF1526_00977	NA	NA
UHGV-2078372_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2078372_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-2078372_17	UniRef90	UniRef90_UPI001D065474	phage major capsid protein	NA
UHGV-2078372_17	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2078372_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2078372_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2078372_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2078372_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2078372_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-2078372_18	UniRef90	UniRef90_UPI001EE04D35	phage portal protein	NA
UHGV-2078372_18	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-2078372_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2078372_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2078372_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2078372_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2078372_19	UniRef90	UniRef90_A0A4V2F7T1	Phage terminase large subunit-like protein	NA
UHGV-2078372_19	eggNOG-mapper	318464.IO99_13765	Terminase	NA
UHGV-2078372_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2078372_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2078372_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2078372_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2078372_20	PHROG	phrog_1066	NA	unknown function
UHGV-2078372_20	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-2078372_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2078372_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2078372_21	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-2078372_21	eggNOG-mapper	1203606.HMPREF1526_00983	HNH endonuclease	NA
UHGV-2078372_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2078372_22	UniRef90	UniRef90_A0A894KH71	Ribosomal RNA small subunit methyltransferase B	NA
UHGV-2078372_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2078372_23	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-2078372_23	Structural annotation	PF02996	NA	NA
UHGV-2078372_28	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2078372_28	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-2078372_29	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2078372_29	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2078372_29	UniRef90	UniRef90_UPI0009F1D145	DEAD/DEAH box helicase	NA
UHGV-2078372_29	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-2078372_29	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2078372_29	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2078372_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2078372_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2078372_29	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2078372_30	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2078372_30	UniRef90	UniRef90_UPI0008DA87C1	VRR-NUC domain-containing protein	NA
UHGV-2078372_30	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-2078372_30	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-2078372_31	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2078372_31	UniRef90	UniRef90_UPI0008D977D3	virulence-associated E family protein	NA
UHGV-2078372_31	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-2078372_31	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2078372_31	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2078372_31	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-2078372_32	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2078372_32	PHROG	phrog_10285	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2078372_32	UniRef90	UniRef90_H1D4T1	POLAc domain-containing protein	NA
UHGV-2078372_32	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-2078372_32	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2078372_32	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2078372_32	Structural annotation	PF00476, NF011540	NA	NA
UHGV-2078372_33	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2078372_33	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2078372_33	UniRef90	UniRef90_UPI00189BB753	DNA polymerase	NA
UHGV-2078372_33	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-2078372_33	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2078372_34	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2078372_34	UniRef90	UniRef90_UPI0009F72FD0	NA	NA
UHGV-2078372_34	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-2078372_34	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2078372_34	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2078372_35	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-2078372_35	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2078372_35	UniRef90	UniRef90_UPI0008D9B927	NA	NA
UHGV-2078372_35	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-2078372_35	Pfam	PF10926	NA	DUF2800
UHGV-2078372_35	COG	COG2887	RecB family exonuclease	NA
UHGV-2078372_35	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2078372_36	PHROG	phrog_22695	NA	unknown function
UHGV-2078372_36	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-2078372_38	UniRef90	UniRef90_A0A894KJ06	Type II secretory pathway component PulF-like protein	NA
UHGV-2078372_41	Structural annotation	PF10743, NF040990, COG3311	NA	NA
UHGV-2078372_42	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2078372_42	UniRef90	UniRef90_UPI00109BC3B9	NA	NA
UHGV-2078372_42	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-2078372_42	Structural annotation	PF06573	NA	NA
UHGV-2078372_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2078372_47	UniRef90	UniRef90_UPI001E32C9FE	helix-turn-helix domain-containing protein	NA
UHGV-2078372_47	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2078372_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078372_47	Structural annotation	PF01381, TIGR02607, COG1396	NA	NA
UHGV-2078372_48	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2078372_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2078372_48	UniRef90	UniRef90_UPI001E378795	helix-turn-helix transcriptional regulator	NA
UHGV-2078372_48	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2078372_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078372_48	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2078372_48	Structural annotation	PF12844, NF041951, COG1396	NA	NA