UHGV-2078435

Genome information

Genome length 60,384 bps

CDS count 84

Completeness 96.62% (high-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-2078435
vOTU ID	vOTU-014470
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029484\|Ga0244116_100011\|provirus_139272_199655
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.62% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.58
Jumbo phage	No

Genome content
Genome length	60,384 bps
GC content	47.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	84
CDS density	93.38%
Average CDS length	674.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2078435_1	PHROG	phrog_9854	NA	unknown function
UHGV-2078435_1	UniRef90	UniRef90_UPI0014728F49	transglycosylase SLT domain-containing protein	NA
UHGV-2078435_1	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-2078435_1	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-2078435_1	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2078435_1	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-2078435_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-2078435_1	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-2078435_2	eggNOG-mapper	76869.PputGB1_1758	NA	NA
UHGV-2078435_3	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-2078435_3	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-2078435_3	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-2078435_3	Structural annotation	PF01079, NF038136	NA	NA
UHGV-2078435_4	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2078435_4	UniRef90	UniRef90_UPI00195546F8	HNH endonuclease	NA
UHGV-2078435_4	eggNOG-mapper	1274524.BSONL12_04374	HNH endonuclease	NA
UHGV-2078435_4	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2078435_5	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-2078435_6	eggNOG-mapper	1401067.HMPREF0872_03755	NA	NA
UHGV-2078435_6	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-2078435_8	KOfam	K07273	acm; lysozyme	NA
UHGV-2078435_8	PHROG	phrog_291	endolysin	lysis
UHGV-2078435_8	UniRef90	UniRef90_A0A1M6N739	Glycosyl hydrolases family 25	NA
UHGV-2078435_8	eggNOG-mapper	1485543.JMME01000005_gene885	lysozyme activity	NA
UHGV-2078435_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2078435_8	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2078435_8	Structural annotation	PF01183, MF_00134_A, NF007266, COG3757	NA	NA
UHGV-2078435_9	PHROG	phrog_28789	NA	unknown function
UHGV-2078435_9	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-2078435_9	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-2078435_10	PHROG	phrog_4105	NA	unknown function
UHGV-2078435_10	eggNOG-mapper	706434.HMPREF9429_00642	NA	NA
UHGV-2078435_11	UniRef90	UniRef90_K1SQH7	Integrase family protein	NA
UHGV-2078435_11	eggNOG-mapper	883156.HMPREF9282_01261	Phage integrase family	NA
UHGV-2078435_11	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2078435_12	KOfam	K07496	K07496; putative transposase	NA
UHGV-2078435_12	PHROG	phrog_506	transposase	integration and excision
UHGV-2078435_12	UniRef90	UniRef90_S7ISW5	Transposase ISLasa12	NA
UHGV-2078435_12	eggNOG-mapper	1273103.NM10_11841	TIGRFAM transposase, IS605 OrfB family	NA
UHGV-2078435_12	PADLOC	Type_V_V_U3	Cas12	CRISPR-CAS
UHGV-2078435_12	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-2078435_12	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-2078435_12	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-2078435_12	COG	COG0675	Transposase	NA
UHGV-2078435_12	Structural annotation	PF07282, PF01385, MF_00034, NF040570, COG0675	NA	NA
UHGV-2078435_13	PHROG	phrog_6465	tail protein	tail
UHGV-2078435_13	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-2078435_13	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-2078435_13	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2078435_14	PHROG	phrog_5717	tail protein	tail
UHGV-2078435_14	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-2078435_14	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-2078435_14	COG	COG4675	Phage tail collar domain	NA
UHGV-2078435_15	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-2078435_15	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-2078435_16	PHROG	phrog_5417	NA	unknown function
UHGV-2078435_16	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-2078435_16	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-2078435_16	Structural annotation	PF12571	NA	NA
UHGV-2078435_17	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-2078435_17	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2078435_17	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-2078435_18	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-2078435_18	Structural annotation	PF20387	NA	NA
UHGV-2078435_19	Structural annotation	PF20387	NA	NA
UHGV-2078435_21	PHROG	phrog_1328	major head protein	head and packaging
UHGV-2078435_21	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-2078435_21	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-2078435_21	Pfam	PF17236	NA	DUF5309
UHGV-2078435_21	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-2078435_22	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-2078435_24	PHROG	phrog_1216	portal protein	head and packaging
UHGV-2078435_24	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-2078435_24	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-2078435_24	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2078435_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-2078435_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2078435_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2078435_25	UniRef90	UniRef90_A0A6M3IX88	Putative terminase	NA
UHGV-2078435_25	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-2078435_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2078435_25	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-2078435_26	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2078435_26	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-2078435_26	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-2078435_26	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-2078435_26	Structural annotation	PF07141	NA	NA
UHGV-2078435_27	PHROG	phrog_1233	NA	unknown function
UHGV-2078435_27	UniRef90	UniRef90_UPI000C850486	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2078435_27	eggNOG-mapper	1540257.JQMW01000009_gene3748	NA	NA
UHGV-2078435_27	Structural annotation	PF13058	NA	NA
UHGV-2078435_29	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2078435_29	UniRef90	UniRef90_F9MRE0	AP2 domain protein	NA
UHGV-2078435_29	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-2078435_29	Structural annotation	PF18337, PF00847	NA	NA
UHGV-2078435_32	PHROG	phrog_13890	NA	unknown function
UHGV-2078435_32	eggNOG-mapper	1235790.C805_00066	NA	NA
UHGV-2078435_32	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-2078435_36	PHROG	phrog_14350	NA	unknown function
UHGV-2078435_36	UniRef90	UniRef90_F7NK80	NA	NA
UHGV-2078435_36	eggNOG-mapper	679201.HMPREF9334_00497	NA	NA
UHGV-2078435_37	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2078435_37	UniRef90	UniRef90_I8UGA1	AP2/ERF domain-containing protein	NA
UHGV-2078435_37	eggNOG-mapper	1196324.A374_08819	NA	NA
UHGV-2078435_37	Structural annotation	PF00847	NA	NA
UHGV-2078435_38	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-2078435_38	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2078435_41	PHROG	phrog_3878	NA	unknown function
UHGV-2078435_44	PHROG	phrog_11947	NA	unknown function
UHGV-2078435_45	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2078435_45	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2078435_45	UniRef90	UniRef90_A0A413QUD9	Cytosine-specific methyltransferase	NA
UHGV-2078435_45	eggNOG-mapper	1273103.NM10_02362	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2078435_45	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2078435_45	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2078435_45	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2078435_45	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2078435_45	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-2078435_46	PHROG	phrog_1672	NA	unknown function
UHGV-2078435_46	UniRef90	UniRef90_S7HT72	NA	NA
UHGV-2078435_47	eggNOG-mapper	1273103.NM10_01139	NA	NA
UHGV-2078435_53	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2078435_53	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-2078435_56	PHROG	phrog_37395	NA	unknown function
UHGV-2078435_58	PHROG	phrog_236	nucleotide kinase	other
UHGV-2078435_58	UniRef90	UniRef90_UPI000DA60B0D	NA	NA
UHGV-2078435_58	eggNOG-mapper	1209989.TepiRe1_2623	NA	NA
UHGV-2078435_58	Pfam	PF11753	NA	DUF3310
UHGV-2078435_60	PHROG	phrog_4074	NA	unknown function
UHGV-2078435_60	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-2078435_60	Structural annotation	TIGR04550	NA	NA
UHGV-2078435_61	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2078435_61	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2078435_61	UniRef90	UniRef90_A0A2S0MAB6	dUTP diphosphatase	NA
UHGV-2078435_61	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-2078435_61	Pfam	PF00692	dUTPase	dUTPase
UHGV-2078435_61	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-2078435_61	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2078435_61	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-2078435_63	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2078435_63	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2078435_63	UniRef90	UniRef90_A0A355U095	Single-stranded DNA-binding protein	NA
UHGV-2078435_63	eggNOG-mapper	706434.HMPREF9429_00712	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2078435_63	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2078435_63	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2078435_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2078435_63	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2078435_63	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2078435_64	PHROG	phrog_9804	NA	unknown function
UHGV-2078435_64	UniRef90	UniRef90_A0A1C5TFI8	Inhibitor_G39P domain-containing protein	NA
UHGV-2078435_64	eggNOG-mapper	97138.C820_00774	Loader and inhibitor of phage G40P	NA
UHGV-2078435_64	AcrCatalog	cluster_137185	NA	NA
UHGV-2078435_64	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2078435_64	Structural annotation	PF11417	NA	NA
UHGV-2078435_65	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2078435_65	UniRef90	UniRef90_A0A1I2QK58	Transcriptional regulator, GntR family	NA
UHGV-2078435_65	eggNOG-mapper	290402.Cbei_3733	DnaD domain protein	NA
UHGV-2078435_65	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2078435_65	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-2078435_66	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2078435_66	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2078435_66	UniRef90	UniRef90_A0A2S0M9D0	HNHc domain-containing protein	NA
UHGV-2078435_66	eggNOG-mapper	1174528.JH992892_gene6517	reverse transcriptase	NA
UHGV-2078435_66	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2078435_66	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2078435_66	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2078435_67	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2078435_67	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-2078435_67	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-2078435_68	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2078435_68	UniRef90	UniRef90_UPI001967E103	NUMOD4 domain-containing protein	NA
UHGV-2078435_68	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-2078435_68	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2078435_68	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2078435_68	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-2078435_69	PHROG	phrog_7792	NA	unknown function
UHGV-2078435_69	UniRef90	UniRef90_UPI001D07B780	RAD52 family DNA repair protein	NA
UHGV-2078435_69	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-2078435_70	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2078435_70	UniRef90	UniRef90_UPI001472A545	siphovirus Gp157 family protein	NA
UHGV-2078435_70	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-2078435_70	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2078435_70	Structural annotation	PF05565	NA	NA
UHGV-2078435_74	PHROG	phrog_7735	excisionase	integration and excision
UHGV-2078435_74	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-2078435_75	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2078435_75	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2078435_75	UniRef90	UniRef90_UPI0014759289	phage antirepressor	NA
UHGV-2078435_75	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-2078435_75	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2078435_75	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2078435_75	COG	COG3617	Prophage antirepressor	NA
UHGV-2078435_75	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-2078435_76	UniRef90	UniRef90_A0A2S0M9G3	XRE family transcriptional regulator	NA
UHGV-2078435_76	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2078435_76	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2078435_76	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2078435_78	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2078435_78	UniRef90	UniRef90_UPI0009337F92	helix-turn-helix transcriptional regulator	NA
UHGV-2078435_78	eggNOG-mapper	1009370.ALO_12841	NA	NA
UHGV-2078435_78	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078435_78	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2078435_79	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2078435_79	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2078435_79	UniRef90	UniRef90_A0A1M6P4Q0	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2078435_79	eggNOG-mapper	1232428.CAVO010000067_gene444	Helix-turn-helix XRE-family like proteins	NA
UHGV-2078435_79	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2078435_79	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078435_79	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2078435_79	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-2078435_80	PHROG	phrog_87	metallo-protease	other
UHGV-2078435_80	UniRef90	UniRef90_A0A1M6P4K0	Peptidase_M78 domain-containing protein	NA
UHGV-2078435_80	eggNOG-mapper	1123489.AUAN01000010_gene379	IrrE N-terminal-like domain	NA
UHGV-2078435_80	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2078435_80	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2078435_80	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2078435_82	eggNOG-mapper	429009.Adeg_1341	Staphylococcal nuclease homologue	NA
UHGV-2078435_82	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-2078435_82	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-2078435_84	KOfam	K14059	int; integrase	NA
UHGV-2078435_84	PHROG	phrog_1	integrase	integration and excision
UHGV-2078435_84	UniRef90	UniRef90_A0A2S0M9C1	Site-specific integrase	NA
UHGV-2078435_84	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-2078435_84	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2078435_84	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2078435_84	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA