UHGV-2078539

Genome information

Genome length 42,214 bps

CDS count 69

Completeness 93.33% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-2078539
vOTU ID	vOTU-069772
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029508\|Ga0244830_100022\|provirus_139120_181333
BioSample	SAMEA3708681
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.73
Jumbo phage	No

Genome content
Genome length	42,214 bps
GC content	45.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	88.57%
Average CDS length	545.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2078539_1	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-2078539_1	PHROG	phrog_2649	endolysin	lysis
UHGV-2078539_1	UniRef90	UniRef90_A0A2T3FT45	Peptidase_M15_4 domain-containing protein	NA
UHGV-2078539_1	eggNOG-mapper	1235802.C823_01946	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-2078539_1	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-2078539_1	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-2078539_1	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-2078539_2	PHROG	phrog_1129	holin	lysis
UHGV-2078539_2	UniRef90	UniRef90_A0A2M8Z2Y7	Holin family Hol44 protein (Superfamily V)	NA
UHGV-2078539_2	eggNOG-mapper	411902.CLOBOL_03236	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2078539_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2078539_2	Structural annotation	PF16079	NA	NA
UHGV-2078539_3	PHROG	phrog_1863	NA	unknown function
UHGV-2078539_3	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-2078539_3	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2078539_4	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2078539_4	Structural annotation	NF040910	NA	NA
UHGV-2078539_5	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-2078539_6	UniRef90	UniRef90_UPI0018A018CD	pyocin knob domain-containing protein	NA
UHGV-2078539_6	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-2078539_7	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-2078539_7	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2078539_7	Structural annotation	PF07675, NF038128	NA	NA
UHGV-2078539_8	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2078539_9	eggNOG-mapper	585501.HMPREF6123_0821	NA	NA
UHGV-2078539_10	PHROG	phrog_18725	NA	unknown function
UHGV-2078539_10	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-2078539_11	PHROG	phrog_32744	NA	unknown function
UHGV-2078539_11	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-2078539_11	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2078539_12	PHROG	phrog_1194	NA	unknown function
UHGV-2078539_12	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-2078539_12	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2078539_13	PHROG	phrog_37543	NA	unknown function
UHGV-2078539_13	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-2078539_13	eggNOG-mapper	1432847.V5USK5_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2078539_13	Structural annotation	PF11172	NA	NA
UHGV-2078539_14	PHROG	phrog_706	NA	unknown function
UHGV-2078539_14	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-2078539_14	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-2078539_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2078539_14	Structural annotation	PF06854	NA	NA
UHGV-2078539_15	PHROG	phrog_11299	NA	unknown function
UHGV-2078539_15	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-2078539_15	Structural annotation	PF10666	NA	NA
UHGV-2078539_16	PHROG	phrog_3099	NA	unknown function
UHGV-2078539_16	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-2078539_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2078539_17	PHROG	phrog_3266	tail completion	connector
UHGV-2078539_17	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2078539_17	Structural annotation	PF12691	NA	NA
UHGV-2078539_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2078539_18	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-2078539_18	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2078539_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2078539_18	Structural annotation	PF11114	NA	NA
UHGV-2078539_19	PHROG	phrog_3366	NA	unknown function
UHGV-2078539_19	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2078539_19	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2078539_20	PHROG	phrog_8680	NA	unknown function
UHGV-2078539_20	UniRef90	UniRef90_A0A3R6IJR2	NA	NA
UHGV-2078539_20	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2078539_20	Pfam	PF14386	NA	DUF4417
UHGV-2078539_20	Structural annotation	PF14386	NA	NA
UHGV-2078539_22	PHROG	phrog_9479	NA	unknown function
UHGV-2078539_22	eggNOG-mapper	633697.EubceDRAFT1_2041	NA	NA
UHGV-2078539_22	Structural annotation	PF15529	NA	NA
UHGV-2078539_23	PHROG	phrog_1129	holin	lysis
UHGV-2078539_23	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-2078539_23	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2078539_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2078539_23	Structural annotation	PF06946	NA	NA
UHGV-2078539_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2078539_25	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2078539_26	PHROG	phrog_247	major head protein	head and packaging
UHGV-2078539_26	UniRef90	UniRef90_A0A3R6K7E9	Phage coat protein	NA
UHGV-2078539_26	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-2078539_26	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-2078539_26	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2078539_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2078539_27	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2078539_27	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2078539_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2078539_28	UniRef90	UniRef90_A0A3R6JN99	Conjugal transfer protein	NA
UHGV-2078539_28	eggNOG-mapper	608534.GCWU000341_00501	Cysteine-rich KTR	NA
UHGV-2078539_28	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-2078539_28	Structural annotation	PF14205, NF041070	NA	NA
UHGV-2078539_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2078539_29	UniRef90	UniRef90_A0A416DA39	Phage capsid protein	NA
UHGV-2078539_29	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-2078539_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2078539_29	COG	COG2369	NA	NA
UHGV-2078539_29	Structural annotation	PF06152	NA	NA
UHGV-2078539_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-2078539_30	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-2078539_30	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2078539_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2078539_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2078539_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2078539_31	UniRef90	UniRef90_A0A417JCV1	PBSX family phage terminase large subunit	NA
UHGV-2078539_31	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2078539_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2078539_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2078539_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2078539_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2078539_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-2078539_31	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2078539_32	PHROG	phrog_33130	NA	unknown function
UHGV-2078539_32	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-2078539_32	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2078539_33	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2078539_33	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2078539_33	UniRef90	UniRef90_A0A417WCT9	ParA family protein	NA
UHGV-2078539_33	eggNOG-mapper	879212.DespoDRAFT_03562	AAA domain	NA
UHGV-2078539_33	Pfam	PF13614	AAA domain	AAA_31
UHGV-2078539_33	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2078539_33	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-2078539_36	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-2078539_36	UniRef90	UniRef90_A0A396Q4H5	Bro-N domain-containing protein	NA
UHGV-2078539_36	eggNOG-mapper	1151292.QEW_2476	BRO family, N-terminal domain	NA
UHGV-2078539_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2078539_36	COG	COG3617	Prophage antirepressor	NA
UHGV-2078539_36	Structural annotation	PF02498, COG3617	NA	NA
UHGV-2078539_37	UniRef90	UniRef90_A0A7X5DAV1	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-2078539_37	Pfam	PF05534	HicB family	HicB
UHGV-2078539_37	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-2078539_38	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2078539_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2078539_38	UniRef90	UniRef90_UPI0013E92A23	helix-turn-helix domain-containing protein	NA
UHGV-2078539_38	eggNOG-mapper	1033737.CAEV01000029_gene314	Helix-turn-helix domain protein	NA
UHGV-2078539_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078539_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2078539_40	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2078539_40	UniRef90	UniRef90_A0A3R6Y6X2	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-2078539_40	eggNOG-mapper	411468.CLOSCI_01516	periplasmic or secreted lipoprotein	NA
UHGV-2078539_40	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2078539_40	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2078539_40	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2078539_41	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2078539_41	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2078539_41	UniRef90	UniRef90_A0A417SX25	HicB family protein	NA
UHGV-2078539_41	eggNOG-mapper	411468.CLOSCI_01515	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2078539_41	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2078539_41	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2078539_41	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2078539_43	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-2078539_43	AcrCatalog	cluster_11670	NA	NA
UHGV-2078539_44	Structural annotation	PF02295, PF18697, MF_01177, NF033788, COG0640	NA	NA
UHGV-2078539_45	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2078539_45	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2078539_45	UniRef90	UniRef90_A0A417SYA4	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2078539_45	eggNOG-mapper	1235798.C817_01883	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2078539_45	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2078539_45	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2078539_45	COG	COG0338	DNA-adenine methylase	NA
UHGV-2078539_45	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-2078539_46	PHROG	phrog_15768	NA	unknown function
UHGV-2078539_46	UniRef90	UniRef90_A0A316T437	NA	NA
UHGV-2078539_46	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-2078539_46	AcrCatalog	cluster_38323	NA	NA
UHGV-2078539_46	Pfam	PF19808	NA	DUF6291
UHGV-2078539_46	Structural annotation	PF19808	NA	NA
UHGV-2078539_47	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2078539_47	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-2078539_47	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2078539_48	PHROG	phrog_2113	NA	unknown function
UHGV-2078539_49	PHROG	phrog_7566	NA	unknown function
UHGV-2078539_49	UniRef90	UniRef90_A0A3R6TI62	Phosphoenolpyruvate carboxykinase	NA
UHGV-2078539_49	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-2078539_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2078539_50	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-2078539_50	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2078539_51	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2078539_51	UniRef90	UniRef90_A0A416D916	Single-stranded DNA-binding protein	NA
UHGV-2078539_51	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-2078539_51	Pfam	PF04404	ERF superfamily	ERF
UHGV-2078539_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2078539_51	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2078539_52	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2078539_52	UniRef90	UniRef90_A0A1C6CBG4	Siphovirus Gp157	NA
UHGV-2078539_52	eggNOG-mapper	447909.A6M981_9VIRU	Siphovirus Gp157	NA
UHGV-2078539_52	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2078539_52	Structural annotation	PF05565	NA	NA
UHGV-2078539_54	UniRef90	UniRef90_UPI001BC23C38	Nitrogenase molybdenum-iron protein subunit beta	NA
UHGV-2078539_61	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2078539_61	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2078539_61	UniRef90	UniRef90_A0A3R6Y6W2	Phage antirepressor Ant	NA
UHGV-2078539_61	eggNOG-mapper	431943.CKL_2660	Phage antirepressor protein	NA
UHGV-2078539_61	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2078539_61	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2078539_61	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2078539_61	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2078539_62	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2078539_62	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-2078539_62	UniRef90	UniRef90_UPI0009D68101	ORF6C domain-containing protein	NA
UHGV-2078539_62	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-2078539_62	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2078539_62	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2078539_62	COG	COG3617	Prophage antirepressor	NA
UHGV-2078539_62	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-2078539_63	UniRef90	UniRef90_A0A1C5ZMM8	HTH_8 domain-containing protein	NA
UHGV-2078539_63	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-2078539_63	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2078539_64	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2078539_64	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2078539_64	UniRef90	UniRef90_A0A417J9T7	Helix-turn-helix domain-containing protein	NA
UHGV-2078539_64	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-2078539_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078539_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2078539_64	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2078539_65	PHROG	phrog_87	metallo-protease	other
UHGV-2078539_65	UniRef90	UniRef90_UPI0011863754	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2078539_65	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-2078539_65	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2078539_65	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2078539_66	PHROG	phrog_10226	NA	unknown function
UHGV-2078539_66	eggNOG-mapper	1347369.CCAD010000077_gene2877	Restriction endonuclease	NA
UHGV-2078539_66	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-2078539_67	PHROG	phrog_10226	NA	unknown function
UHGV-2078539_67	eggNOG-mapper	416870.llmg_2265	NA	NA
UHGV-2078539_69	KOfam	K14059	int; integrase	NA
UHGV-2078539_69	PHROG	phrog_1	integrase	integration and excision
UHGV-2078539_69	UniRef90	UniRef90_A0A3R6MTQ4	Site-specific integrase	NA
UHGV-2078539_69	eggNOG-mapper	608534.GCWU000341_02323	Belongs to the 'phage' integrase family	NA
UHGV-2078539_69	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2078539_69	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2078539_69	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2078539_69	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA