UHGV-2078982

Genome information

Genome length 34,739 bps

CDS count 55

Completeness 91.84% (high-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-2078982
vOTU ID	vOTU-014471
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029475\|Ga0244097_100072\|provirus_47554_82292
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.39
Jumbo phage	No

Genome content
Genome length	34,739 bps
GC content	36.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.10%
Average CDS length	579.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2078982_1	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2078982_1	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-2078982_1	UniRef90	UniRef90_A0A3B8UK65	HTH cro/C1-type domain-containing protein	NA
UHGV-2078982_1	eggNOG-mapper	1410622.JNKY01000015_gene360	Helix-turn-helix XRE-family like proteins	NA
UHGV-2078982_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078982_1	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2078982_2	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-2078982_3	UniRef90	UniRef90_UPI001C10185D	phage minor capsid protein	NA
UHGV-2078982_3	eggNOG-mapper	1123263.AUKY01000072_gene2115	NA	NA
UHGV-2078982_3	Structural annotation	PF13424, TIGR01641	NA	NA
UHGV-2078982_4	PHROG	phrog_20886	NA	unknown function
UHGV-2078982_4	UniRef90	UniRef90_A0A660M5N1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2078982_4	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-2078982_4	Structural annotation	PF06114	NA	NA
UHGV-2078982_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2078982_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2078982_5	UniRef90	UniRef90_A0A3D5LQZ9	XRE family transcriptional regulator	NA
UHGV-2078982_5	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-2078982_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078982_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2078982_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2078982_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2078982_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2078982_6	UniRef90	UniRef90_A0A356C4L0	XRE family transcriptional regulator	NA
UHGV-2078982_6	eggNOG-mapper	1161413.HMPREF1510_1296	Transcriptional regulator	NA
UHGV-2078982_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078982_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2078982_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2078982_7	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2078982_7	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-2078982_7	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2078982_8	PHROG	phrog_20040	NA	unknown function
UHGV-2078982_8	eggNOG-mapper	1538644.KO02_12130	NA	NA
UHGV-2078982_13	PHROG	phrog_3657	NA	unknown function
UHGV-2078982_13	eggNOG-mapper	1304866.K413DRAFT_3015	NA	NA
UHGV-2078982_14	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2078982_14	UniRef90	UniRef90_A0A356C6D2	NA	NA
UHGV-2078982_14	eggNOG-mapper	1304866.K413DRAFT_3016	NA	NA
UHGV-2078982_14	Pfam	PF12684	NA	DUF3799
UHGV-2078982_14	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2078982_14	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-2078982_15	PHROG	phrog_7566	NA	unknown function
UHGV-2078982_15	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-2078982_15	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-2078982_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2078982_17	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2078982_17	UniRef90	UniRef90_A0A6N7WNE3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2078982_17	eggNOG-mapper	33035.JPJF01000071_gene4466	crossover junction endodeoxyribonuclease activity	NA
UHGV-2078982_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2078982_17	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2078982_18	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2078982_18	UniRef90	UniRef90_E4QBK3	Putative transcriptional regulator, GntR family	NA
UHGV-2078982_18	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-2078982_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2078982_18	Structural annotation	PF09202, MF_01819, TIGR01610, COG1959	NA	NA
UHGV-2078982_20	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2078982_20	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2078982_20	UniRef90	UniRef90_A0A415UM63	Oxidoreductase	NA
UHGV-2078982_20	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-2078982_20	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2078982_20	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2078982_20	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2078982_20	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2078982_21	UniRef90	UniRef90_A0A5D0WN28	LLM class flavin-dependent oxidoreductase	NA
UHGV-2078982_21	eggNOG-mapper	394503.Ccel_2966	NA	NA
UHGV-2078982_21	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-2078982_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2078982_24	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2078982_24	Structural annotation	PF02996	NA	NA
UHGV-2078982_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2078982_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2078982_26	UniRef90	UniRef90_A0A356C6K0	Terminase small subunit	NA
UHGV-2078982_26	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-2078982_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2078982_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2078982_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2078982_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2078982_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2078982_27	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-2078982_27	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-2078982_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2078982_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2078982_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2078982_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-2078982_28	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-2078982_28	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2078982_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2078982_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2078982_29	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-2078982_29	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2078982_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2078982_29	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2078982_29	Structural annotation	PF06152	NA	NA
UHGV-2078982_30	UniRef90	UniRef90_UPI00066D3680	minor capsid protein	NA
UHGV-2078982_30	eggNOG-mapper	1194526.A284_07065	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2078982_30	COG	COG2369	NA	NA
UHGV-2078982_32	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2078982_32	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-2078982_32	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-2078982_32	Pfam	PF14359	NA	DUF4406
UHGV-2078982_32	Structural annotation	PF14359	NA	NA
UHGV-2078982_34	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2078982_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2078982_34	UniRef90	UniRef90_A0A373CZH5	XRE family transcriptional regulator	NA
UHGV-2078982_34	eggNOG-mapper	431943.CKL_1947	sequence-specific DNA binding	NA
UHGV-2078982_34	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2078982_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2078982_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2078982_35	Pfam	PF09274	ParG	ParG
UHGV-2078982_35	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-2078982_36	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2078982_36	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-2078982_36	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-2078982_36	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2078982_36	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2078982_36	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2078982_36	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2078982_36	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-2078982_38	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2078982_38	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-2078982_39	PHROG	phrog_422	major head protein	head and packaging
UHGV-2078982_39	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-2078982_39	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2078982_39	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2078982_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2078982_40	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-2078982_41	PHROG	phrog_8710	NA	unknown function
UHGV-2078982_41	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-2078982_41	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2078982_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2078982_42	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2078982_42	Structural annotation	PF11114	NA	NA
UHGV-2078982_43	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2078982_43	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-2078982_43	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-2078982_43	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2078982_43	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2078982_44	PHROG	phrog_820	major tail protein	tail
UHGV-2078982_44	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-2078982_44	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-2078982_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2078982_45	PHROG	phrog_8300	NA	unknown function
UHGV-2078982_45	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-2078982_45	Structural annotation	PF06896	NA	NA
UHGV-2078982_46	PHROG	phrog_8355	NA	unknown function
UHGV-2078982_46	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-2078982_46	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-2078982_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2078982_46	Structural annotation	PF06854	NA	NA
UHGV-2078982_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2078982_47	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-2078982_47	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-2078982_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2078982_47	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2078982_48	PHROG	phrog_1194	NA	unknown function
UHGV-2078982_48	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2078982_48	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2078982_49	PHROG	phrog_1401	NA	unknown function
UHGV-2078982_49	UniRef90	UniRef90_UPI001D00FC65	NA	NA
UHGV-2078982_49	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-2078982_49	Structural annotation	PF07761	NA	NA
UHGV-2078982_50	PHROG	phrog_6616	tail protein	tail
UHGV-2078982_50	UniRef90	UniRef90_A0A1C5VLA0	Collagen triple helix repeat (20 copies)	NA
UHGV-2078982_50	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-2078982_50	COG	COG4926	Phage-related protein	NA
UHGV-2078982_50	Structural annotation	PF14594, PF00629, NF033848, NF033675, COG3500	NA	NA
UHGV-2078982_51	PHROG	phrog_38044	NA	unknown function
UHGV-2078982_51	eggNOG-mapper	428127.EUBDOL_01565	cellulase activity	NA
UHGV-2078982_51	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2078982_53	PHROG	phrog_1401	NA	unknown function
UHGV-2078982_53	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-2078982_53	eggNOG-mapper	1294142.CINTURNW_1041	NA	NA
UHGV-2078982_53	Structural annotation	PF07761	NA	NA
UHGV-2078982_54	PHROG	phrog_199	holin	lysis
UHGV-2078982_54	UniRef90	UniRef90_A0A3D5LSL4	Holin	NA
UHGV-2078982_54	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-2078982_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2078982_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2078982_54	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2078982_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2078982_55	KOfam	K07273	acm; lysozyme	NA
UHGV-2078982_55	PHROG	phrog_291	endolysin	lysis
UHGV-2078982_55	UniRef90	UniRef90_A0A174PB89	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-2078982_55	eggNOG-mapper	469596.HMPREF9488_01959	Glycosyl hydrolase family 25	NA
UHGV-2078982_55	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2078982_55	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2078982_55	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA