UHGV-2079182

Genome information

vOTU vOTU-020832

Genome length 42,834 bps

CDS count 71

Completeness 52.95% (medium-quality)

geNomad score 0.9182

Prediction confidence Confident

Genome information
Genome ID	UHGV-2079182
vOTU ID	vOTU-020832
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029460\|Ga0244138_100382\|provirus_4803_53330
BioSample	SAMEA3708543
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	52.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9182
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.71
Jumbo phage	No

Genome content
Genome length	42,834 bps
GC content	29.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.64%
Average CDS length	549.55 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2079182_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2079182_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2079182_1	UniRef90	UniRef90_UPI00195C5B42	recombinase family protein	NA
UHGV-2079182_1	eggNOG-mapper	1321779.HMPREF1984_00537	Recombinase	NA
UHGV-2079182_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2079182_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2079182_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2079182_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-2079182_6	PHROG	phrog_1583	NA	unknown function
UHGV-2079182_6	UniRef90	UniRef90_A0A7X2NN93	NA	NA
UHGV-2079182_6	eggNOG-mapper	1304866.K413DRAFT_4671	NA	NA
UHGV-2079182_6	Pfam	PF03235	NA	DUF262
UHGV-2079182_6	COG	COG1479	NA	NA
UHGV-2079182_6	Structural annotation	PF03235, COG1479	NA	NA
UHGV-2079182_9	eggNOG-mapper	469618.FVAG_00770	NA	NA
UHGV-2079182_13	PHROG	phrog_1097	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2079182_13	UniRef90	UniRef90_UPI000E40C1BD	Rad52/Rad22 family DNA repair protein	NA
UHGV-2079182_13	eggNOG-mapper	1499683.CCFF01000014_gene3934	Rad52/22 family double-strand break repair protein	NA
UHGV-2079182_13	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-2079182_13	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2079182_13	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2079182_19	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2079182_19	UniRef90	UniRef90_A0A5M9RFC8	NA	NA
UHGV-2079182_19	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-2079182_19	Structural annotation	COG2250	NA	NA
UHGV-2079182_22	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2079182_22	UniRef90	UniRef90_UPI000E4721F7	helix-turn-helix domain-containing protein	NA
UHGV-2079182_22	eggNOG-mapper	469616.FMAG_01531	Transcriptional regulator	NA
UHGV-2079182_22	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2079182_22	Structural annotation	PF01381, MF_02017, TIGR02607, COG3655	NA	NA
UHGV-2079182_23	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-2079182_23	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2079182_23	UniRef90	UniRef90_UPI000E41B5B0	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-2079182_23	eggNOG-mapper	1408439.JHXW01000005_gene1139	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-2079182_23	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2079182_23	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-2079182_23	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-2079182_23	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-2079182_24	PHROG	phrog_4085	NA	unknown function
UHGV-2079182_24	UniRef90	UniRef90_A0A133N739	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-2079182_24	eggNOG-mapper	1095747.HMPREF1049_1577	NA	NA
UHGV-2079182_24	Pfam	PF19807	NA	DUF6290
UHGV-2079182_24	Structural annotation	PF19807, NF041418, COG4710	NA	NA
UHGV-2079182_29	eggNOG-mapper	469618.FVAG_00786	DnaD domain protein	NA
UHGV-2079182_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2079182_30	UniRef90	UniRef90_H1PNW0	RepA_N domain-containing protein	NA
UHGV-2079182_30	eggNOG-mapper	469618.FVAG_00786	DnaD domain protein	NA
UHGV-2079182_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2079182_31	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2079182_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2079182_31	UniRef90	UniRef90_A0A2P1RZI5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-2079182_31	eggNOG-mapper	469617.FUAG_00816	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2079182_31	PADLOC	SspD_00001	SspD	SSP
UHGV-2079182_31	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2079182_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2079182_31	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-2079182_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2079182_37	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2079182_37	eggNOG-mapper	1465639.A0A060BS16_9CAUD	magnesium ion binding	NA
UHGV-2079182_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2079182_38	PHROG	phrog_98	NA	unknown function
UHGV-2079182_38	UniRef90	UniRef90_UPI001F38BFF6	YopX family protein	NA
UHGV-2079182_38	eggNOG-mapper	1214217.ALNF01000014_gene1387	YopX protein	NA
UHGV-2079182_38	Pfam	PF09643	YopX protein	YopX
UHGV-2079182_38	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2079182_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2079182_40	PHROG	phrog_2329	NA	unknown function
UHGV-2079182_40	UniRef90	UniRef90_U2T1A7	SpoVT-AbrB domain-containing protein	NA
UHGV-2079182_40	eggNOG-mapper	634994.GCWU000323_00539	NA	NA
UHGV-2079182_40	Structural annotation	MF_01193, NF007312, COG2336	NA	NA
UHGV-2079182_42	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-2079182_42	UniRef90	UniRef90_A0A510L815	P22_AR_N domain-containing protein	NA
UHGV-2079182_42	eggNOG-mapper	1005058.UMN179_02406	P22_AR N-terminal domain	NA
UHGV-2079182_42	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-2079182_42	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2079182_42	Structural annotation	PF10547, TIGR02681, COG3617	NA	NA
UHGV-2079182_43	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-2079182_43	UniRef90	UniRef90_UPI001F3A487D	NA	NA
UHGV-2079182_43	eggNOG-mapper	1295642.H839_08279	NA	NA
UHGV-2079182_43	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2079182_43	COG	COG5484	NA	NA
UHGV-2079182_43	Structural annotation	PF10668, PF02996, NF040601, COG5484	NA	NA
UHGV-2079182_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2079182_44	PHROG	phrog_10250	NA	unknown function
UHGV-2079182_44	UniRef90	UniRef90_A0A842J0Q2	PBSX family phage terminase large subunit	NA
UHGV-2079182_44	eggNOG-mapper	749413.E5DV50_9VIRU	Terminase-like family	NA
UHGV-2079182_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2079182_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2079182_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2079182_45	PHROG	phrog_220	head morphogenesis	head and packaging
UHGV-2079182_45	UniRef90	UniRef90_J6H778	Phage protein F-like protein	NA
UHGV-2079182_45	eggNOG-mapper	469618.FVAG_00795	NA	NA
UHGV-2079182_45	Pfam	PF06074	NA	DUF935
UHGV-2079182_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2079182_45	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2079182_45	COG	COG2369	NA	NA
UHGV-2079182_45	Structural annotation	PF06074, PF04233, MF_04120, TIGR01537, TIGR01641, COG4383	NA	NA
UHGV-2079182_46	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-2079182_47	PHROG	phrog_34633	NA	unknown function
UHGV-2079182_47	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-2079182_48	PHROG	phrog_8309	NA	unknown function
UHGV-2079182_48	UniRef90	UniRef90_UPI001E3A07D3	head decoration protein	NA
UHGV-2079182_48	eggNOG-mapper	235909.GK0543	tail collar domain protein	NA
UHGV-2079182_48	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA
UHGV-2079182_49	PHROG	phrog_26	tail completion or Neck1 protein	connector
UHGV-2079182_49	UniRef90	UniRef90_E5BEP7	Phage virion morphogenesis protein	NA
UHGV-2079182_49	eggNOG-mapper	311402.Avi_2997	Phage virion morphogenesis family	NA
UHGV-2079182_49	Pfam	PF05069	Phage virion morphogenesis family	Phage_tail_S
UHGV-2079182_49	NCBIFam	TIGR01635.1	phage virion morphogenesis protein	NA
UHGV-2079182_49	COG	COG5005	NA	NA
UHGV-2079182_49	Structural annotation	PF05069, TIGR01635, COG5005	NA	NA
UHGV-2079182_50	eggNOG-mapper	556263.FSEG_00490	NA	NA
UHGV-2079182_50	Structural annotation	PF05929	NA	NA
UHGV-2079182_52	eggNOG-mapper	1122173.AXVL01000018_gene431	NA	NA
UHGV-2079182_52	Structural annotation	PF03864, MF_04133, NF033394, COG4653	NA	NA
UHGV-2079182_56	PHROG	phrog_290	minor tail protein	tail
UHGV-2079182_56	UniRef90	UniRef90_UPI001F502052	phage tail tube protein	NA
UHGV-2079182_56	eggNOG-mapper	556263.FSEG_00495	NA	NA
UHGV-2079182_56	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-2079182_59	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-2079182_59	UniRef90	UniRef90_A0A059N3D7	Phage tail tape measure protein, TP901 family	NA
UHGV-2079182_59	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-2079182_59	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2079182_59	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2079182_59	COG	COG5283	Phage-related tail protein	NA
UHGV-2079182_60	UniRef90	UniRef90_A0A064AN19	PhageMin_Tail domain-containing protein	NA
UHGV-2079182_60	eggNOG-mapper	556263.FSEG_00498	Phage-related minor tail protein	NA
UHGV-2079182_60	COG	COG1293	Ribosome quality control (RQC) protein RqcH, Rqc2/NEMF/Tae2 family, contains fibronectin-(FbpA) and RNA- (NFACT) binding domains	NA
UHGV-2079182_61	eggNOG-mapper	556263.FSEG_00501	NA	NA
UHGV-2079182_65	UniRef90	UniRef90_A0A414TSA4	Leucine-rich repeat domain-containing protein	NA
UHGV-2079182_65	eggNOG-mapper	1125701.HMPREF1221_02331	domain, Protein	NA
UHGV-2079182_65	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2079182_65	COG	COG5492	NA	NA
UHGV-2079182_66	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2079182_67	PHROG	phrog_15439	peptidase	other
UHGV-2079182_67	eggNOG-mapper	1415166.NONO_c73630	tail collar domain protein	NA
UHGV-2079182_67	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2079182_68	PHROG	phrog_4636	tail spike protein	tail
UHGV-2079182_68	UniRef90	UniRef90_UPI001C62B4E5	tail fiber domain-containing protein	NA
UHGV-2079182_68	eggNOG-mapper	1403313.AXBR01000002_gene4314	Hep Hag repeat protein	NA
UHGV-2079182_68	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2079182_68	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2079182_69	eggNOG-mapper	469617.FUAG_00855	NA	NA
UHGV-2079182_70	eggNOG-mapper	469618.FVAG_02551	NA	NA
UHGV-2079182_71	eggNOG-mapper	469616.FMAG_01055	NA	NA