UHGV-2079635

Genome information

Genome length 33,355 bps

CDS count 45

Completeness 78.45% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-2079635
vOTU ID	vOTU-021805
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029447\|Ga0243899_1001107
BioSample	SAMN05971611
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.97
Jumbo phage	No

Genome content
Genome length	33,355 bps
GC content	51.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.66%
Average CDS length	682.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2079635_2	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-2079635_3	UniRef90	UniRef90_UPI00094F0146	helix-turn-helix domain-containing protein	NA
UHGV-2079635_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2079635_3	Structural annotation	PF01381, PF05339, MF_00535, NF041951, COG3655, COG3093	NA	NA
UHGV-2079635_5	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2079635_5	UniRef90	UniRef90_UPI0008D9397B	host-nuclease inhibitor Gam family protein	NA
UHGV-2079635_5	eggNOG-mapper	568816.Acin_1854	Bacteriophage Mu Gam like protein	NA
UHGV-2079635_5	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-2079635_5	Structural annotation	PF07352	NA	NA
UHGV-2079635_6	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2079635_6	UniRef90	UniRef90_UPI0008D96E31	AAA family ATPase	NA
UHGV-2079635_6	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-2079635_6	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2079635_7	eggNOG-mapper	568816.Acin_1852	NA	NA
UHGV-2079635_7	Structural annotation	PF05037	NA	NA
UHGV-2079635_8	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2079635_8	UniRef90	UniRef90_UPI0008D9B52C	NA	NA
UHGV-2079635_8	eggNOG-mapper	568816.Acin_1851	NA	NA
UHGV-2079635_8	Pfam	PF06048	NA	DUF927
UHGV-2079635_8	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2079635_8	COG	COG5519	NA	NA
UHGV-2079635_8	Structural annotation	PF06048, PF18662, MF_04154, MF_01625, NF005477, COG5519, COG4643	NA	NA
UHGV-2079635_9	eggNOG-mapper	1131462.DCF50_p1314	NA	NA
UHGV-2079635_11	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2079635_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2079635_11	UniRef90	UniRef90_UPI00094ED0FC	DEAD/DEAH box helicase	NA
UHGV-2079635_11	eggNOG-mapper	568816.Acin_1846	helicase superfamily c-terminal domain	NA
UHGV-2079635_11	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2079635_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2079635_11	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-2079635_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2079635_11	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2079635_11	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2079635_12	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2079635_12	UniRef90	UniRef90_UPI0008D9D3D9	VRR-NUC domain-containing protein	NA
UHGV-2079635_12	eggNOG-mapper	568816.Acin_1844	VRR-NUC domain	NA
UHGV-2079635_12	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2079635_16	PHROG	phrog_1689	nucleotide kinase	other
UHGV-2079635_16	UniRef90	UniRef90_UPI0004132AF9	NA	NA
UHGV-2079635_16	eggNOG-mapper	706434.HMPREF9429_00542	NA	NA
UHGV-2079635_16	Pfam	PF11753	NA	DUF3310
UHGV-2079635_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2079635_17	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2079635_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2079635_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2079635_18	UniRef90	UniRef90_A0A851IDK6	Terminase small subunit	NA
UHGV-2079635_18	eggNOG-mapper	526218.Sterm_1425	terminase small subunit	NA
UHGV-2079635_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2079635_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2079635_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2079635_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2079635_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2079635_19	UniRef90	UniRef90_G4Q9A6	Phage terminase large subunit	NA
UHGV-2079635_19	eggNOG-mapper	568816.Acin_1386	Phage terminase, large subunit	NA
UHGV-2079635_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2079635_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2079635_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2079635_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-2079635_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2079635_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-2079635_20	UniRef90	UniRef90_G4Q9A5	SPP1 family phage portal protein	NA
UHGV-2079635_20	eggNOG-mapper	568816.Acin_1385	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2079635_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2079635_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2079635_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2079635_21	PHROG	phrog_29127	NA	unknown function
UHGV-2079635_21	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-2079635_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2079635_22	UniRef90	UniRef90_G4Q9A3	Phage minor structural protein GP20	NA
UHGV-2079635_22	eggNOG-mapper	568816.Acin_1383	Phage minor structural protein GP20	NA
UHGV-2079635_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2079635_22	Structural annotation	PF06810	NA	NA
UHGV-2079635_23	PHROG	phrog_247	major head protein	head and packaging
UHGV-2079635_23	UniRef90	UniRef90_G4Q9A2	Coat protein	NA
UHGV-2079635_23	eggNOG-mapper	568816.Acin_1382	NA	NA
UHGV-2079635_23	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-2079635_23	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-2079635_24	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-2079635_24	UniRef90	UniRef90_G4Q9A1	Putative head protein	NA
UHGV-2079635_24	eggNOG-mapper	568816.Acin_1381	Phage Mu protein F like protein	NA
UHGV-2079635_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2079635_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2079635_24	COG	COG2369	NA	NA
UHGV-2079635_24	Structural annotation	PF04233, TIGR01641, COG2357	NA	NA
UHGV-2079635_25	eggNOG-mapper	1089550.ATTH01000001_gene1061	NA	NA
UHGV-2079635_26	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2079635_26	eggNOG-mapper	1273103.NM10_01059	NA	NA
UHGV-2079635_27	PHROG	phrog_615	head-tail adaptor	connector
UHGV-2079635_27	UniRef90	UniRef90_UPI001C3978D4	ABC transporter ATP-binding protein	NA
UHGV-2079635_27	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-2079635_27	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2079635_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2079635_28	UniRef90	UniRef90_UPI0005EBC23C	HK97 gp10 family phage protein	NA
UHGV-2079635_28	eggNOG-mapper	1273103.NM10_01049	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2079635_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2079635_28	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2079635_29	PHROG	phrog_525	NA	unknown function
UHGV-2079635_29	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-2079635_29	Pfam	PF20765	NA	DUF6838
UHGV-2079635_29	Structural annotation	PF20765	NA	NA
UHGV-2079635_30	PHROG	phrog_1480	tail sheath	tail
UHGV-2079635_30	UniRef90	UniRef90_A0A269TCE8	Phage tail sheath protein	NA
UHGV-2079635_30	eggNOG-mapper	1273103.NM10_01039	Phage tail sheath C-terminal domain	NA
UHGV-2079635_30	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2079635_30	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2079635_30	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2079635_31	PHROG	phrog_365	tail protein	tail
UHGV-2079635_31	UniRef90	UniRef90_U7UKD6	PF09393 family protein	NA
UHGV-2079635_31	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-2079635_31	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2079635_31	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2079635_32	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-2079635_32	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-2079635_32	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2079635_32	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2079635_32	Structural annotation	PF08890	NA	NA
UHGV-2079635_33	PHROG	phrog_16692	NA	unknown function
UHGV-2079635_33	UniRef90	UniRef90_G4Q995	Phage tail tape measure protein, TP901 family, core region domain protein	NA
UHGV-2079635_33	eggNOG-mapper	568816.Acin_1375	Phage-related minor tail protein	NA
UHGV-2079635_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2079635_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2079635_33	COG	COG5283	Phage-related tail protein	NA
UHGV-2079635_33	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-2079635_34	PHROG	phrog_380	endolysin	lysis
UHGV-2079635_34	UniRef90	UniRef90_A0A0C1UAF4	LysM domain protein	NA
UHGV-2079635_34	eggNOG-mapper	568816.Acin_1374	LysM domain	NA
UHGV-2079635_34	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2079635_34	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-2079635_35	PHROG	phrog_400	tail protein	tail
UHGV-2079635_35	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-2079635_35	eggNOG-mapper	568816.Acin_1373	NLP P60 protein	NA
UHGV-2079635_35	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2079635_35	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2079635_36	PHROG	phrog_579	NA	unknown function
UHGV-2079635_36	UniRef90	UniRef90_A0A413QUA5	NA	NA
UHGV-2079635_36	eggNOG-mapper	1273103.NM10_01009	NA	NA
UHGV-2079635_36	Pfam	PF10844	NA	DUF2577
UHGV-2079635_36	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-2079635_37	PHROG	phrog_120	baseplate protein	tail
UHGV-2079635_37	UniRef90	UniRef90_G4Q991	NA	NA
UHGV-2079635_37	eggNOG-mapper	568816.Acin_1371	NA	NA
UHGV-2079635_37	Pfam	PF10934	NA	DUF2634
UHGV-2079635_37	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2079635_38	PHROG	phrog_6	baseplate protein	tail
UHGV-2079635_38	UniRef90	UniRef90_G4Q990	Baseplate_J domain-containing protein	NA
UHGV-2079635_38	eggNOG-mapper	568816.Acin_1370	Baseplate J-like protein	NA
UHGV-2079635_38	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2079635_38	COG	COG3299	NA	NA
UHGV-2079635_38	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2079635_39	PHROG	phrog_521	tail protein	tail
UHGV-2079635_39	UniRef90	UniRef90_UPI0008E678DD	NA	NA
UHGV-2079635_39	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-2079635_39	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2079635_39	COG	COG3778	NA	NA
UHGV-2079635_40	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2079635_40	UniRef90	UniRef90_UPI001D02D521	phage tail protein	NA
UHGV-2079635_40	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-2079635_40	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-2079635_40	COG	COG4675	Phage tail collar domain	NA
UHGV-2079635_41	PHROG	phrog_24267	NA	unknown function
UHGV-2079635_41	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-2079635_41	COG	COG4675	Phage tail collar domain	NA
UHGV-2079635_42	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-2079635_44	PHROG	phrog_6465	tail protein	tail
UHGV-2079635_44	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-2079635_44	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-2079635_44	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2079635_45	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-2079635_45	COG	COG4675	Phage tail collar domain	NA