UHGV-2079952

Genome information

Genome length 31,457 bps

CDS count 45

Completeness 88.39% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-2079952
vOTU ID	vOTU-016928
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029437\|Ga0242826_1000631\|provirus_3_31459
BioSample	SAMN05545074
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.72
Jumbo phage	No

Genome content
Genome length	31,457 bps
GC content	61.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.56%
Average CDS length	658.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2079952_1	PHROG	phrog_9534	head protein	head and packaging
UHGV-2079952_1	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-2079952_1	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-2079952_1	Structural annotation	PF21567	NA	NA
UHGV-2079952_2	PHROG	phrog_538	minor tail protein	tail
UHGV-2079952_2	UniRef90	UniRef90_UPI001C0C4E4F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2079952_2	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-2079952_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2079952_2	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2079952_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2079952_3	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-2079952_3	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-2079952_3	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2079952_4	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2079952_4	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-2079952_4	COG	COG1511	NA	NA
UHGV-2079952_5	PHROG	phrog_1633	NA	unknown function
UHGV-2079952_6	PHROG	phrog_1526	NA	unknown function
UHGV-2079952_6	UniRef90	UniRef90_F3MWB0	NA	NA
UHGV-2079952_7	PHROG	phrog_117	major tail protein	tail
UHGV-2079952_7	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-2079952_7	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-2079952_7	COG	COG5492	NA	NA
UHGV-2079952_7	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2079952_8	PHROG	phrog_123	tail terminator	connector
UHGV-2079952_8	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-2079952_8	Structural annotation	PF06141	NA	NA
UHGV-2079952_9	PHROG	phrog_387	neck protein	connector
UHGV-2079952_9	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-2079952_10	PHROG	phrog_501	head closure Hc1	connector
UHGV-2079952_10	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-2079952_10	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-2079952_10	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2079952_11	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2079952_11	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2079952_11	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2079952_11	Structural annotation	PF09355	NA	NA
UHGV-2079952_12	PHROG	phrog_267	major head protein	head and packaging
UHGV-2079952_12	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-2079952_12	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-2079952_12	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2079952_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2079952_13	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-2079952_13	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-2079952_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2079952_13	Structural annotation	PF06810	NA	NA
UHGV-2079952_14	PHROG	phrog_3675	NA	unknown function
UHGV-2079952_14	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-2079952_14	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-2079952_14	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2079952_14	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-2079952_16	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-2079952_16	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-2079952_16	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-2079952_16	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-2079952_17	PHROG	phrog_104	portal protein	head and packaging
UHGV-2079952_17	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-2079952_17	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2079952_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2079952_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2079952_18	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-2079952_18	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-2079952_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2079952_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2079952_18	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2079952_19	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-2079952_19	Structural annotation	PF19962	NA	NA
UHGV-2079952_20	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2079952_20	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-2079952_20	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-2079952_20	Structural annotation	PF01844	NA	NA
UHGV-2079952_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2079952_21	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-2079952_21	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-2079952_21	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-2079952_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2079952_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2079952_22	UniRef90	UniRef90_UPI00122CFAB3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2079952_22	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-2079952_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2079952_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2079952_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2079952_23	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2079952_23	eggNOG-mapper	742738.HMPREF9460_01357	Primase C terminal 2 (PriCT-2)	NA
UHGV-2079952_23	COG	COG3598	RecA-family ATPase	NA
UHGV-2079952_24	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2079952_24	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2079952_24	UniRef90	UniRef90_A0A2A6Z731	DNA primase	NA
UHGV-2079952_24	eggNOG-mapper	610130.Closa_1370	Primase C terminal 2 (PriCT-2)	NA
UHGV-2079952_24	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2079952_24	Pfam	PF13481	AAA domain	AAA_25
UHGV-2079952_24	COG	COG3598	RecA-family ATPase	NA
UHGV-2079952_24	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2079952_25	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2079952_25	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2079952_25	UniRef90	UniRef90_A0A3A6K1C0	DEAD/DEAH box helicase	NA
UHGV-2079952_25	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-2079952_25	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2079952_25	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2079952_25	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2079952_25	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2079952_25	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2079952_26	PHROG	phrog_2698	NA	unknown function
UHGV-2079952_26	UniRef90	UniRef90_A0A291T9B6	NA	NA
UHGV-2079952_26	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-2079952_26	Structural annotation	PF05037	NA	NA
UHGV-2079952_27	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2079952_27	UniRef90	UniRef90_UPI00122C2B12	ATP-binding protein	NA
UHGV-2079952_27	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-2079952_27	Pfam	PF13479	AAA domain	AAA_24
UHGV-2079952_27	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2079952_28	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2079952_28	PHROG	phrog_1499	NA	unknown function
UHGV-2079952_28	UniRef90	UniRef90_A0A3A6KBP8	Chromosome segregation protein SMC	NA
UHGV-2079952_28	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-2079952_28	Pfam	PF13476	AAA domain	AAA_23
UHGV-2079952_28	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2079952_28	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2079952_29	PHROG	phrog_1733	NA	unknown function
UHGV-2079952_29	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-2079952_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2079952_29	Structural annotation	PF03677	NA	NA
UHGV-2079952_30	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-2079952_30	Structural annotation	PF12957	NA	NA
UHGV-2079952_32	Structural annotation	PF12270, NF040944	NA	NA
UHGV-2079952_34	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-2079952_34	Pfam	PF05339	NA	DUF739
UHGV-2079952_34	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2079952_34	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-2079952_36	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-2079952_40	Structural annotation	PF13601, MF_01819, TIGR03433, COG1695	NA	NA
UHGV-2079952_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2079952_42	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2079952_42	UniRef90	UniRef90_E2ZIF0	DNA-binding helix-turn-helix protein	NA
UHGV-2079952_42	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-2079952_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2079952_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2079952_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2079952_44	eggNOG-mapper	748224.HMPREF9436_01443	vancomycin resistance protein	NA
UHGV-2079952_44	COG	COG2720	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	NA
UHGV-2079952_45	KOfam	K14059	int; integrase	NA
UHGV-2079952_45	PHROG	phrog_1	integrase	integration and excision
UHGV-2079952_45	UniRef90	UniRef90_A0A316RZQ6	Tyr recombinase domain-containing protein	NA
UHGV-2079952_45	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-2079952_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2079952_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2079952_45	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA