UHGV-2080659

Genome information

Genome length 32,158 bps

CDS count 39

Completeness 74.70% (medium-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-2080659
vOTU ID	vOTU-036302
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029499\|Ga0244789_100202\|provirus_1_32158
BioSample	SAMEA3708640
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.82
Jumbo phage	No

Genome content
Genome length	32,158 bps
GC content	41.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.96%
Average CDS length	754.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2080659_1	UniRef90	UniRef90_UPI001CA5CDE8	prealbumin-like fold domain-containing protein	NA
UHGV-2080659_1	eggNOG-mapper	411461.DORFOR_03096	NA	NA
UHGV-2080659_1	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-2080659_2	UniRef90	UniRef90_R9MMB9	LPXTG-domain-containing protein cell wall anchor domain	NA
UHGV-2080659_2	eggNOG-mapper	411461.DORFOR_03096	NA	NA
UHGV-2080659_2	Pfam	PF17802	Prealbumin-like fold domain	SpaA
UHGV-2080659_2	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-2080659_3	PHROG	phrog_7566	NA	unknown function
UHGV-2080659_3	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-2080659_6	PHROG	phrog_6568	NA	unknown function
UHGV-2080659_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2080659_7	UniRef90	UniRef90_A0A416N3D8	NA	NA
UHGV-2080659_7	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-2080659_7	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2080659_7	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2080659_7	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2080659_8	PHROG	phrog_3634	NA	unknown function
UHGV-2080659_8	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-2080659_8	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-2080659_9	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-2080659_9	UniRef90	UniRef90_UPI00189EABEF	phage terminase small subunit	NA
UHGV-2080659_9	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-2080659_9	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2080659_9	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2080659_9	COG	COG5484	NA	NA
UHGV-2080659_9	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-2080659_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2080659_10	PHROG	phrog_10250	NA	unknown function
UHGV-2080659_10	UniRef90	UniRef90_A0A416N3M1	PBSX family phage terminase large subunit	NA
UHGV-2080659_10	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-2080659_10	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2080659_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2080659_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-2080659_10	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2080659_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-2080659_11	UniRef90	UniRef90_A0A416N3J2	Phage portal protein	NA
UHGV-2080659_11	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-2080659_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2080659_11	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2080659_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2080659_12	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-2080659_12	UniRef90	UniRef90_A0A416N3U1	Phage head morphogenesis protein	NA
UHGV-2080659_12	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2080659_12	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2080659_12	Pfam	PF21814	NA	DUF6883
UHGV-2080659_12	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2080659_12	COG	COG2369	NA	NA
UHGV-2080659_12	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-2080659_13	PHROG	phrog_34731	NA	unknown function
UHGV-2080659_13	eggNOG-mapper	1136177.KCA1_1759	NA	NA
UHGV-2080659_13	Structural annotation	PF02699, MF_00369, TIGR00739, COG5475	NA	NA
UHGV-2080659_15	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-2080659_15	UniRef90	UniRef90_R9N6L4	ORF6N domain-containing protein	NA
UHGV-2080659_15	eggNOG-mapper	1235798.C817_03462	ORF6N domain	NA
UHGV-2080659_15	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2080659_15	Structural annotation	PF10543, PF15188, MF_01506, TIGR02681, COG3646	NA	NA
UHGV-2080659_16	Structural annotation	PF01281	NA	NA
UHGV-2080659_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2080659_17	UniRef90	UniRef90_A0A417H3S7	NA	NA
UHGV-2080659_17	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-2080659_17	Pfam	PF14265	NA	DUF4355
UHGV-2080659_17	Structural annotation	PF14265	NA	NA
UHGV-2080659_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-2080659_18	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-2080659_18	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-2080659_18	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2080659_19	PHROG	phrog_2724	NA	unknown function
UHGV-2080659_19	UniRef90	UniRef90_A0A564VY53	Rho_N domain-containing protein	NA
UHGV-2080659_19	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2080659_19	Structural annotation	PF07498	NA	NA
UHGV-2080659_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2080659_20	UniRef90	UniRef90_A0A1G5F1K3	Phage gp6-like head-tail connector protein	NA
UHGV-2080659_20	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-2080659_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2080659_20	Structural annotation	PF05135	NA	NA
UHGV-2080659_21	PHROG	phrog_2168	NA	unknown function
UHGV-2080659_21	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-2080659_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2080659_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2080659_22	UniRef90	UniRef90_A0A416N3K7	HK97 gp10 family phage protein	NA
UHGV-2080659_22	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2080659_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2080659_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2080659_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2080659_23	PHROG	phrog_78	tail terminator	connector
UHGV-2080659_23	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-2080659_23	Structural annotation	PF05657	NA	NA
UHGV-2080659_24	PHROG	phrog_158	major tail protein	tail
UHGV-2080659_24	UniRef90	UniRef90_A0A416N3N0	Phage tail protein	NA
UHGV-2080659_24	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-2080659_24	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2080659_25	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2080659_25	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-2080659_25	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-2080659_25	Pfam	PF19591	NA	DUF6096
UHGV-2080659_25	Structural annotation	PF19591	NA	NA
UHGV-2080659_26	PHROG	phrog_2066	NA	unknown function
UHGV-2080659_26	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-2080659_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2080659_27	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-2080659_27	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2080659_27	COG	COG5283	Phage-related tail protein	NA
UHGV-2080659_28	PHROG	phrog_1194	NA	unknown function
UHGV-2080659_28	UniRef90	UniRef90_A0A0Z8JCS0	NA	NA
UHGV-2080659_28	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-2080659_28	Pfam	PF20458	NA	DUF6711
UHGV-2080659_28	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2080659_29	PHROG	phrog_2566	NA	unknown function
UHGV-2080659_29	eggNOG-mapper	543734.LCABL_09980	NA	NA
UHGV-2080659_30	PHROG	phrog_1401	NA	unknown function
UHGV-2080659_30	UniRef90	UniRef90_UPI001E3A7391	NA	NA
UHGV-2080659_30	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-2080659_30	Structural annotation	PF07761	NA	NA
UHGV-2080659_31	PHROG	phrog_6616	tail protein	tail
UHGV-2080659_31	UniRef90	UniRef90_A5ZPK6	Phage minor structural protein, N-terminal domain protein	NA
UHGV-2080659_31	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-2080659_31	COG	COG4926	Phage-related protein	NA
UHGV-2080659_31	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-2080659_32	UniRef90	UniRef90_UPI001EE002C0	pyocin knob domain-containing protein	NA
UHGV-2080659_32	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-2080659_32	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-2080659_33	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2080659_33	PHROG	phrog_1	integrase	integration and excision
UHGV-2080659_33	UniRef90	UniRef90_A0A6L8Y1E4	Tyrosine-type recombinase/integrase	NA
UHGV-2080659_33	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2080659_33	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2080659_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2080659_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2080659_33	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2080659_36	PHROG	phrog_9886	NA	unknown function
UHGV-2080659_36	UniRef90	UniRef90_A0A416N3L5	Peptidase S74 domain-containing protein	NA
UHGV-2080659_36	eggNOG-mapper	1123075.AUDP01000020_gene1524	Prophage endopeptidase tail	NA
UHGV-2080659_36	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2080659_36	COG	COG4926	Phage-related protein	NA
UHGV-2080659_36	Structural annotation	PF03944	NA	NA
UHGV-2080659_37	PHROG	phrog_4105	NA	unknown function
UHGV-2080659_37	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2080659_38	PHROG	phrog_1129	holin	lysis
UHGV-2080659_38	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-2080659_38	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2080659_38	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2080659_38	Structural annotation	PF16079	NA	NA
UHGV-2080659_39	PHROG	phrog_14030	NA	unknown function
UHGV-2080659_39	UniRef90	UniRef90_UPI001D07F964	C40 family peptidase	NA
UHGV-2080659_39	eggNOG-mapper	411459.RUMOBE_01085	NA	NA
UHGV-2080659_39	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2080659_39	Structural annotation	PF05382, PF19087, NF033741, COG0791	NA	NA