UHGV-2081683

Genome information

Genome length 38,473 bps

CDS count 60

Completeness 96.38% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-2081683
vOTU ID	vOTU-011148
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029518\|Ga0244795_100044\|provirus_17757_64794
BioSample	SAMEA3708646
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.38% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.61
Jumbo phage	No

Genome content
Genome length	38,473 bps
GC content	41.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.20%
Average CDS length	600.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2081683_1	PHROG	phrog_443	holin	lysis
UHGV-2081683_1	UniRef90	UniRef90_UPI001F16E4E6	holin	NA
UHGV-2081683_1	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-2081683_1	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2081683_1	Structural annotation	PF16945	NA	NA
UHGV-2081683_2	PHROG	phrog_23452	NA	unknown function
UHGV-2081683_2	UniRef90	UniRef90_A0A174JNC4	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-2081683_2	eggNOG-mapper	1280698.AUJS01000010_gene819	Putative peptidoglycan binding domain	NA
UHGV-2081683_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2081683_2	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2081683_2	Structural annotation	PF01471, COG3409	NA	NA
UHGV-2081683_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2081683_3	PHROG	phrog_95	integrase	integration and excision
UHGV-2081683_3	UniRef90	UniRef90_A6BEV3	Resolvase, N-terminal domain protein	NA
UHGV-2081683_3	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-2081683_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2081683_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-2081683_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2081683_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2081683_3	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-2081683_4	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-2081683_5	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-2081683_5	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2081683_5	UniRef90	UniRef90_A0A173VG58	Endonuclease	NA
UHGV-2081683_5	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-2081683_5	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2081683_5	COG	COG4748	NA	NA
UHGV-2081683_5	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-2081683_6	PHROG	phrog_20886	NA	unknown function
UHGV-2081683_6	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2081683_6	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-2081683_6	Structural annotation	PF06114	NA	NA
UHGV-2081683_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2081683_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2081683_7	UniRef90	UniRef90_A0A173VG78	Helix-turn-helix domain-containing protein	NA
UHGV-2081683_7	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2081683_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2081683_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2081683_7	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2081683_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2081683_8	UniRef90	UniRef90_UPI001EDEFE90	helix-turn-helix domain-containing protein	NA
UHGV-2081683_8	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-2081683_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2081683_8	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2081683_8	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-2081683_9	PHROG	phrog_4989	NA	unknown function
UHGV-2081683_9	Structural annotation	PF19190, MF_00791, NF011735, COG3354	NA	NA
UHGV-2081683_11	PHROG	phrog_4392	NA	unknown function
UHGV-2081683_11	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-2081683_12	PHROG	phrog_3882	NA	unknown function
UHGV-2081683_15	PHROG	phrog_32342	NA	unknown function
UHGV-2081683_16	eggNOG-mapper	411462.DORLON_00814	NA	NA
UHGV-2081683_17	PHROG	phrog_3777	NA	unknown function
UHGV-2081683_17	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-2081683_17	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-2081683_17	Pfam	PF12957	NA	DUF3846
UHGV-2081683_17	Structural annotation	PF12957	NA	NA
UHGV-2081683_18	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-2081683_19	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2081683_19	UniRef90	UniRef90_A0A564SBZ1	Siphovirus Gp157	NA
UHGV-2081683_19	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-2081683_19	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2081683_19	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2081683_20	Structural annotation	PF14902	NA	NA
UHGV-2081683_21	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2081683_21	UniRef90	UniRef90_UPI001D06DB67	ATP-binding protein	NA
UHGV-2081683_21	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-2081683_21	Pfam	PF13479	AAA domain	AAA_24
UHGV-2081683_21	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2081683_22	PHROG	phrog_18107	NA	unknown function
UHGV-2081683_22	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-2081683_22	Structural annotation	PF05037	NA	NA
UHGV-2081683_23	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2081683_23	UniRef90	UniRef90_A0A391NZM9	ERCC4 domain-containing protein	NA
UHGV-2081683_23	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-2081683_23	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2081683_23	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-2081683_24	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2081683_24	PHROG	phrog_11992	NA	unknown function
UHGV-2081683_24	UniRef90	UniRef90_A0A6L8RVS7	DNA primase	NA
UHGV-2081683_24	eggNOG-mapper	397290.C810_05175	CHC2 zinc finger	NA
UHGV-2081683_24	PADLOC	drt-cluster192	DRT	DRT
UHGV-2081683_24	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2081683_24	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2081683_24	Structural annotation	PF01807	NA	NA
UHGV-2081683_25	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2081683_25	UniRef90	UniRef90_A0A6N9JUH3	NA	NA
UHGV-2081683_25	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-2081683_25	Pfam	PF06048	NA	DUF927
UHGV-2081683_25	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2081683_25	COG	COG5519	NA	NA
UHGV-2081683_25	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2081683_27	PHROG	phrog_15077	NA	unknown function
UHGV-2081683_27	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-2081683_27	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-2081683_27	Structural annotation	NF038070	NA	NA
UHGV-2081683_28	PHROG	phrog_26445	NA	unknown function
UHGV-2081683_28	UniRef90	UniRef90_A0A412MF67	DNA-binding response regulator	NA
UHGV-2081683_28	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-2081683_28	Structural annotation	PF13384, MF_00475, TIGR02531, COG1710	NA	NA
UHGV-2081683_29	PHROG	phrog_15198	NA	unknown function
UHGV-2081683_29	UniRef90	UniRef90_UPI0015715EFA	NA	NA
UHGV-2081683_29	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-2081683_29	Pfam	PF04448	NA	DUF551
UHGV-2081683_30	PHROG	phrog_15198	NA	unknown function
UHGV-2081683_30	UniRef90	UniRef90_UPI0011110A17	NA	NA
UHGV-2081683_30	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-2081683_30	Pfam	PF04448	NA	DUF551
UHGV-2081683_31	PHROG	phrog_11564	DNA methyltransferase	other
UHGV-2081683_31	UniRef90	UniRef90_UPI001E362196	class I SAM-dependent methyltransferase	NA
UHGV-2081683_31	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-2081683_31	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2081683_31	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-2081683_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2081683_33	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-2081683_33	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-2081683_33	Structural annotation	PF02996	NA	NA
UHGV-2081683_35	Structural annotation	PF19865	NA	NA
UHGV-2081683_37	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2081683_37	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2081683_37	UniRef90	UniRef90_UPI001111365D	terminase small subunit	NA
UHGV-2081683_37	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-2081683_37	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2081683_37	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2081683_37	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2081683_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2081683_38	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2081683_38	UniRef90	UniRef90_UPI001897BF4F	PBSX family phage terminase large subunit	NA
UHGV-2081683_38	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-2081683_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2081683_38	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2081683_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2081683_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-2081683_38	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2081683_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-2081683_39	UniRef90	UniRef90_UPI001A9B67CD	phage portal protein	NA
UHGV-2081683_39	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-2081683_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2081683_39	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2081683_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2081683_40	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2081683_40	UniRef90	UniRef90_UPI001C023785	minor capsid protein	NA
UHGV-2081683_40	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2081683_40	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2081683_40	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2081683_40	COG	COG2369	NA	NA
UHGV-2081683_40	Structural annotation	PF04233, PF04002, TIGR01641, NF000642, COG2003, COG2369	NA	NA
UHGV-2081683_42	Structural annotation	PF11344	NA	NA
UHGV-2081683_44	PHROG	phrog_3675	NA	unknown function
UHGV-2081683_44	UniRef90	UniRef90_UPI001C027742	YjcQ family protein	NA
UHGV-2081683_44	eggNOG-mapper	1118055.CAGU01000029_gene13	YjcQ protein	NA
UHGV-2081683_44	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2081683_44	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-2081683_45	KOfam	K07584	NA	NA
UHGV-2081683_45	PHROG	phrog_4478	peptidase	other
UHGV-2081683_45	UniRef90	UniRef90_UPI00156DEF22	ribosomal-processing cysteine protease Prp	NA
UHGV-2081683_45	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-2081683_45	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2081683_45	COG	COG2868	NA	NA
UHGV-2081683_45	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2081683_46	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2081683_46	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-2081683_46	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-2081683_46	Pfam	PF14265	NA	DUF4355
UHGV-2081683_46	Structural annotation	PF14265	NA	NA
UHGV-2081683_47	PHROG	phrog_544	major head protein	head and packaging
UHGV-2081683_47	UniRef90	UniRef90_A0A173ZE35	S-l_SbsC_C domain-containing protein	NA
UHGV-2081683_47	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2081683_47	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2081683_47	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2081683_48	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-2081683_48	UniRef90	UniRef90_UPI00189B7272	Rho termination protein	NA
UHGV-2081683_49	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2081683_49	UniRef90	UniRef90_A0A173ZES1	Phage gp6-like head-tail connector protein	NA
UHGV-2081683_49	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-2081683_49	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2081683_49	Structural annotation	PF05135	NA	NA
UHGV-2081683_50	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2081683_50	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2081683_50	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2081683_51	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2081683_51	UniRef90	UniRef90_UPI00156D85AA	HK97 gp10 family phage protein	NA
UHGV-2081683_51	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2081683_51	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2081683_51	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2081683_51	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2081683_52	PHROG	phrog_176	tail terminator	connector
UHGV-2081683_52	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-2081683_52	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2081683_52	Structural annotation	PF11367	NA	NA
UHGV-2081683_53	PHROG	phrog_238	major tail protein	tail
UHGV-2081683_53	UniRef90	UniRef90_A0A173YN47	Phage major tail protein, TP901-1 family	NA
UHGV-2081683_53	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2081683_53	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2081683_53	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2081683_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2081683_54	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2081683_54	UniRef90	UniRef90_UPI001D067B55	tail assembly chaperone	NA
UHGV-2081683_54	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-2081683_54	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2081683_54	Structural annotation	PF12363	NA	NA
UHGV-2081683_55	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2081683_55	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-2081683_55	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-2081683_56	PHROG	phrog_1204	tail protein	tail
UHGV-2081683_56	UniRef90	UniRef90_UPI001896B0C6	tape measure protein	NA
UHGV-2081683_56	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-2081683_56	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2081683_56	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2081683_56	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2081683_56	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2081683_57	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2081683_57	UniRef90	UniRef90_UPI00156D6BD7	phage tail family protein	NA
UHGV-2081683_57	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-2081683_57	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2081683_57	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2081683_57	COG	COG4722	Phage-related protein YomH	NA
UHGV-2081683_57	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2081683_58	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-2081683_58	PHROG	phrog_9478	minor tail protein	tail
UHGV-2081683_58	UniRef90	UniRef90_UPI001C0193FC	phage tail protein	NA
UHGV-2081683_58	eggNOG-mapper	543734.LCABL_13420	cellulase activity	NA
UHGV-2081683_58	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2081683_58	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2081683_58	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-2081683_58	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2081683_58	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2081683_58	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2081683_60	PHROG	phrog_1009	NA	unknown function
UHGV-2081683_60	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-2081683_60	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA