UHGV-2081854

Genome information

Genome length 40,392 bps

CDS count 59

Completeness 99.08% (high-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-2081854
vOTU ID	vOTU-014474
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029511\|Ga0244809_100080\|provirus_22376_62767
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	100.88
Jumbo phage	No

Genome content
Genome length	40,392 bps
GC content	45.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	95.17%
Average CDS length	653.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2081854_1	KOfam	K14059	int; integrase	NA
UHGV-2081854_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2081854_1	UniRef90	UniRef90_R7BBQ9	Prophage LambdaBa02 site-specific recombinase phage integrase family	NA
UHGV-2081854_1	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-2081854_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2081854_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2081854_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2081854_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2081854_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2081854_2	PHROG	phrog_87	metallo-protease	other
UHGV-2081854_2	UniRef90	UniRef90_A0A371AUE0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2081854_2	eggNOG-mapper	742733.HMPREF9469_01856	NA	NA
UHGV-2081854_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2081854_3	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-2081854_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2081854_3	UniRef90	UniRef90_A0A414ASB9	XRE family transcriptional regulator	NA
UHGV-2081854_3	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-2081854_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2081854_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2081854_3	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-2081854_4	UniRef90	UniRef90_A0A174J2F0	HTH cro/C1-type domain-containing protein	NA
UHGV-2081854_4	eggNOG-mapper	1203606.HMPREF1526_00303	Helix-turn-helix XRE-family like proteins	NA
UHGV-2081854_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2081854_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2081854_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2081854_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2081854_5	UniRef90	UniRef90_UPI000497B172	phage antirepressor KilAC domain-containing protein	NA
UHGV-2081854_5	eggNOG-mapper	1321786.HMPREF1992_00957	BRO family, N-terminal domain	NA
UHGV-2081854_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2081854_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2081854_5	COG	COG3617	Prophage antirepressor	NA
UHGV-2081854_5	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2081854_7	UniRef90	UniRef90_A0A0D8I7B2	HTH_17 domain-containing protein	NA
UHGV-2081854_7	eggNOG-mapper	1029718.SFBM_0098	Helix-turn-helix domain	NA
UHGV-2081854_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2081854_10	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2081854_10	UniRef90	UniRef90_A0A358NI58	NA	NA
UHGV-2081854_10	eggNOG-mapper	999411.HMPREF1092_03280	NA	NA
UHGV-2081854_10	Pfam	PF10926	NA	DUF2800
UHGV-2081854_10	COG	COG2887	RecB family exonuclease	NA
UHGV-2081854_10	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2081854_11	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2081854_11	UniRef90	UniRef90_A0A412UNI7	NA	NA
UHGV-2081854_11	eggNOG-mapper	1123288.SOV_6c00600	NA	NA
UHGV-2081854_11	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2081854_11	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2081854_12	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2081854_12	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2081854_12	UniRef90	UniRef90_A0A348Z938	POLAc domain-containing protein	NA
UHGV-2081854_12	eggNOG-mapper	696281.Desru_1077	DNA polymerase	NA
UHGV-2081854_12	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2081854_12	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2081854_12	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2081854_13	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2081854_13	UniRef90	UniRef90_UPI001D06E26F	virulence-associated E family protein	NA
UHGV-2081854_13	eggNOG-mapper	748727.CLJU_c36530	virulence-associated E family protein	NA
UHGV-2081854_13	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2081854_13	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2081854_13	Structural annotation	PF05272, NF011296, COG5545	NA	NA
UHGV-2081854_14	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2081854_14	UniRef90	UniRef90_UPI001D08B7F5	VRR-NUC domain-containing protein	NA
UHGV-2081854_14	eggNOG-mapper	1235802.C823_05296	VRR_NUC	NA
UHGV-2081854_14	Structural annotation	PF01974, MF_01490, NF002584	NA	NA
UHGV-2081854_15	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2081854_15	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2081854_15	UniRef90	UniRef90_A0A348Z935	DEAD/DEAH box helicase	NA
UHGV-2081854_15	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-2081854_15	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2081854_15	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2081854_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2081854_15	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2081854_15	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2081854_19	PHROG	phrog_8684	NA	unknown function
UHGV-2081854_19	UniRef90	UniRef90_A0A415D587	YopX domain-containing protein	NA
UHGV-2081854_19	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-2081854_19	Pfam	PF09643	YopX protein	YopX
UHGV-2081854_19	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2081854_19	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2081854_21	Structural annotation	PF20037	NA	NA
UHGV-2081854_22	PHROG	phrog_6568	NA	unknown function
UHGV-2081854_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2081854_23	UniRef90	UniRef90_A0A174B4K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2081854_23	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-2081854_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2081854_23	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-2081854_24	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2081854_24	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-2081854_24	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-2081854_24	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2081854_24	Structural annotation	PF16677	NA	NA
UHGV-2081854_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2081854_25	PHROG	phrog_10250	NA	unknown function
UHGV-2081854_25	UniRef90	UniRef90_A0A1Y4L2U5	Terminase_3 domain-containing protein	NA
UHGV-2081854_25	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-2081854_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2081854_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2081854_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2081854_26	KOfam	K09961	NA	NA
UHGV-2081854_26	PHROG	phrog_146	portal protein	head and packaging
UHGV-2081854_26	UniRef90	UniRef90_G9YWD9	Phage-associated protein, HI1409 family	NA
UHGV-2081854_26	eggNOG-mapper	1007096.BAGW01000022_gene2656	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-2081854_26	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-2081854_26	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-2081854_26	COG	COG3567	NA	NA
UHGV-2081854_26	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-2081854_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2081854_27	UniRef90	UniRef90_A0A316RHV0	Minor capsid protein	NA
UHGV-2081854_27	eggNOG-mapper	742738.HMPREF9460_02508	Portal protein	NA
UHGV-2081854_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2081854_27	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2081854_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2081854_29	PHROG	phrog_29883	NA	unknown function
UHGV-2081854_29	UniRef90	UniRef90_A0A1Y4L8M4	Rubrerythrin domain-containing protein	NA
UHGV-2081854_30	KOfam	K09960	NA	NA
UHGV-2081854_30	PHROG	phrog_16985	NA	unknown function
UHGV-2081854_30	UniRef90	UniRef90_UPI00164BF670	NA	NA
UHGV-2081854_30	eggNOG-mapper	742738.HMPREF9460_02512	NA	NA
UHGV-2081854_30	Pfam	PF09979	NA	DUF2213
UHGV-2081854_30	COG	COG3566	NA	NA
UHGV-2081854_30	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-2081854_31	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-2081854_31	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-2081854_31	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-2081854_31	eggNOG-mapper	742738.HMPREF9460_02513	NA	NA
UHGV-2081854_31	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2081854_31	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2081854_31	Structural annotation	PF09956	NA	NA
UHGV-2081854_32	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-2081854_32	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-2081854_32	eggNOG-mapper	742738.HMPREF9460_02514	NA	NA
UHGV-2081854_32	Structural annotation	PF09956	NA	NA
UHGV-2081854_33	PHROG	phrog_264	major head protein	head and packaging
UHGV-2081854_33	UniRef90	UniRef90_UPI00164AAF0B	NA	NA
UHGV-2081854_33	eggNOG-mapper	742738.HMPREF9460_02515	NA	NA
UHGV-2081854_33	Pfam	PF09950	NA	DUF2184
UHGV-2081854_33	COG	COG4834	NA	NA
UHGV-2081854_33	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-2081854_34	PHROG	phrog_29824	NA	unknown function
UHGV-2081854_35	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-2081854_35	UniRef90	UniRef90_UPI0012DE5897	NA	NA
UHGV-2081854_35	eggNOG-mapper	742738.HMPREF9460_02517	NA	NA
UHGV-2081854_35	Pfam	PF13262	NA	DUF4054
UHGV-2081854_35	Structural annotation	PF13262	NA	NA
UHGV-2081854_36	PHROG	phrog_615	head-tail adaptor	connector
UHGV-2081854_36	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-2081854_37	UniRef90	UniRef90_UPI00164CB61C	HK97 gp10 family phage protein	NA
UHGV-2081854_37	eggNOG-mapper	398512.JQKC01000052_gene2665	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2081854_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2081854_37	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-2081854_38	PHROG	phrog_525	NA	unknown function
UHGV-2081854_38	Pfam	PF20765	NA	DUF6838
UHGV-2081854_38	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2081854_39	PHROG	phrog_30826	NA	unknown function
UHGV-2081854_40	PHROG	phrog_279	tail sheath	tail
UHGV-2081854_40	UniRef90	UniRef90_A0A1Y4L2W8	Phage tail sheath protein	NA
UHGV-2081854_40	eggNOG-mapper	742738.HMPREF9460_02522	Phage tail sheath C-terminal domain	NA
UHGV-2081854_40	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-2081854_40	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2081854_40	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2081854_40	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-2081854_41	PHROG	phrog_365	tail protein	tail
UHGV-2081854_41	UniRef90	UniRef90_A0A174V246	Phage-like element PBSX protein xkdM	NA
UHGV-2081854_41	eggNOG-mapper	742738.HMPREF9460_02523	Phage tail tube protein	NA
UHGV-2081854_41	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2081854_41	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-2081854_42	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2081854_42	UniRef90	UniRef90_A0A174CUN9	Phage XkdN-like protein	NA
UHGV-2081854_42	eggNOG-mapper	742738.HMPREF9460_02524	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2081854_42	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2081854_42	Structural annotation	PF08890, COG4518	NA	NA
UHGV-2081854_43	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-2081854_43	UniRef90	UniRef90_UPI001A9A87F9	tape measure protein	NA
UHGV-2081854_43	eggNOG-mapper	742738.HMPREF9460_02526	tape measure	NA
UHGV-2081854_43	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2081854_43	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2081854_43	COG	COG5281	Phage-related minor tail protein	NA
UHGV-2081854_43	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2081854_44	PHROG	phrog_380	endolysin	lysis
UHGV-2081854_44	UniRef90	UniRef90_UPI000B989465	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2081854_44	eggNOG-mapper	742738.HMPREF9460_02527	LysM domain	NA
UHGV-2081854_44	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2081854_44	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-2081854_45	KOfam	K06905	NA	NA
UHGV-2081854_45	PHROG	phrog_400	tail protein	tail
UHGV-2081854_45	eggNOG-mapper	742738.HMPREF9460_02528	PFAM Phage late control gene D protein (GPD)	NA
UHGV-2081854_45	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-2081854_45	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2081854_46	PHROG	phrog_579	NA	unknown function
UHGV-2081854_46	UniRef90	UniRef90_UPI001D0F2442	NA	NA
UHGV-2081854_46	eggNOG-mapper	642492.Clole_2743	NA	NA
UHGV-2081854_46	Pfam	PF10844	NA	DUF2577
UHGV-2081854_46	Structural annotation	PF10844, COG0186	NA	NA
UHGV-2081854_47	PHROG	phrog_120	baseplate protein	tail
UHGV-2081854_47	UniRef90	UniRef90_UPI00164C7E68	NA	NA
UHGV-2081854_47	eggNOG-mapper	742738.HMPREF9460_02530	NA	NA
UHGV-2081854_47	Pfam	PF10934	NA	DUF2634
UHGV-2081854_47	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2081854_47	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2081854_48	UniRef90	UniRef90_A0A1Y4UET2	zinc_ribbon_2 domain-containing protein	NA
UHGV-2081854_48	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2081854_48	COG	COG1716	Forkhead associated (FHA) domain, binds pSer, pThr, pTyr	NA
UHGV-2081854_49	PHROG	phrog_6	baseplate protein	tail
UHGV-2081854_49	UniRef90	UniRef90_A0A096B737	Baseplate_J domain-containing protein	NA
UHGV-2081854_49	eggNOG-mapper	742738.HMPREF9460_02531	Baseplate J-like protein	NA
UHGV-2081854_49	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2081854_49	COG	COG3299	NA	NA
UHGV-2081854_49	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2081854_50	PHROG	phrog_521	tail protein	tail
UHGV-2081854_50	UniRef90	UniRef90_UPI001A9C8D3A	NA	NA
UHGV-2081854_50	eggNOG-mapper	742738.HMPREF9460_02532	NA	NA
UHGV-2081854_50	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2081854_50	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2081854_50	Structural annotation	PF10076, PF12571, TIGR02242, COG3778	NA	NA
UHGV-2081854_51	PHROG	phrog_30508	NA	unknown function
UHGV-2081854_55	eggNOG-mapper	97138.C820_00248	NA	NA
UHGV-2081854_56	eggNOG-mapper	428125.CLOLEP_01418	NA	NA
UHGV-2081854_57	PHROG	phrog_36029	NA	unknown function
UHGV-2081854_57	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-2081854_57	eggNOG-mapper	1232449.BAHV02000016_gene1809	NA	NA
UHGV-2081854_58	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-2081854_58	UniRef90	UniRef90_R6Q814	NlpC/P60 domain-containing protein	NA
UHGV-2081854_58	eggNOG-mapper	742735.HMPREF9467_02997	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-2081854_58	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA