UHGV-2083083

Genome information

Genome length 38,983 bps

CDS count 78

Completeness 59.24% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-2083083
vOTU ID	vOTU-018310
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029499\|Ga0244789_100316\|provirus_2_38984
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.62
Jumbo phage	No

Genome content
Genome length	38,983 bps
GC content	39.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	85.72%
Average CDS length	432.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2083083_1	PHROG	phrog_22546	NA	unknown function
UHGV-2083083_1	eggNOG-mapper	457424.BFAG_03296	Phage minor structural protein	NA
UHGV-2083083_1	COG	COG4926	Phage-related protein	NA
UHGV-2083083_2	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-2083083_3	eggNOG-mapper	693979.Bache_2416	nuclear chromosome segregation	NA
UHGV-2083083_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2083083_5	eggNOG-mapper	272559.BF9343_2359	NA	NA
UHGV-2083083_6	UniRef90	UniRef90_UPI000E53ECB8	phage holin family protein	NA
UHGV-2083083_6	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-2083083_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2083083_6	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-2083083_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2083083_8	PHROG	phrog_435	endolysin	lysis
UHGV-2083083_8	UniRef90	UniRef90_UPI0018997145	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2083083_8	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-2083083_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2083083_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2083083_8	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-2083083_9	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-2083083_11	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-2083083_11	PHROG	phrog_11541	NA	unknown function
UHGV-2083083_11	UniRef90	UniRef90_I9F997	SGNH_hydro domain-containing protein	NA
UHGV-2083083_11	eggNOG-mapper	762984.HMPREF9445_00185	Leucine-rich repeat (LRR) protein	NA
UHGV-2083083_11	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2083083_11	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-2083083_11	Structural annotation	PF16255, NF041897, COG2845	NA	NA
UHGV-2083083_13	PHROG	phrog_26448	NA	unknown function
UHGV-2083083_13	eggNOG-mapper	762984.HMPREF9445_00190	NA	NA
UHGV-2083083_13	Pfam	PF20647	NA	DUF6808
UHGV-2083083_13	Structural annotation	PF20647	NA	NA
UHGV-2083083_14	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-2083083_14	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-2083083_14	Structural annotation	PF08299, NF004688	NA	NA
UHGV-2083083_15	PHROG	phrog_16490	NA	unknown function
UHGV-2083083_15	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-2083083_15	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-2083083_16	PHROG	phrog_31654	NA	unknown function
UHGV-2083083_16	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-2083083_17	PHROG	phrog_28898	NA	unknown function
UHGV-2083083_17	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-2083083_17	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-2083083_17	Structural annotation	PF10781	NA	NA
UHGV-2083083_18	PHROG	phrog_34053	NA	unknown function
UHGV-2083083_19	PHROG	phrog_38431	NA	unknown function
UHGV-2083083_19	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-2083083_19	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-2083083_20	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-2083083_20	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-2083083_22	UniRef90	UniRef90_UPI0018A04156	phage antirepressor KilAC domain-containing protein	NA
UHGV-2083083_22	eggNOG-mapper	411901.BACCAC_01209	BRO family, N-terminal domain	NA
UHGV-2083083_22	COG	COG3617	Prophage antirepressor	NA
UHGV-2083083_22	Structural annotation	PF08346, COG3561	NA	NA
UHGV-2083083_24	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-2083083_24	Structural annotation	PF13384, TIGR04381	NA	NA
UHGV-2083083_25	Structural annotation	PF02699, MF_01354, NF005100, COG5475	NA	NA
UHGV-2083083_27	Structural annotation	PF08928	NA	NA
UHGV-2083083_30	PHROG	phrog_874	NA	unknown function
UHGV-2083083_30	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-2083083_30	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2083083_31	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2083083_31	UniRef90	UniRef90_A0A357JCP2	HNHc domain-containing protein	NA
UHGV-2083083_31	eggNOG-mapper	1423814.HMPREF0549_1779	NUMOD4 motif	NA
UHGV-2083083_31	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2083083_31	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-2083083_31	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-2083083_32	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-2083083_34	PHROG	phrog_22725	NA	unknown function
UHGV-2083083_34	eggNOG-mapper	476272.RUMHYD_03319	NA	NA
UHGV-2083083_36	PHROG	phrog_12005	NA	unknown function
UHGV-2083083_37	PHROG	phrog_28300	NA	unknown function
UHGV-2083083_39	UniRef90	UniRef90_D1K9K9	NA	NA
UHGV-2083083_39	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-2083083_41	Structural annotation	PF20020	NA	NA
UHGV-2083083_42	Structural annotation	PF02699, MF_00085, TIGR00037, COG0231	NA	NA
UHGV-2083083_43	eggNOG-mapper	1122971.BAME01000058_gene4471	NA	NA
UHGV-2083083_43	Structural annotation	PF18275	NA	NA
UHGV-2083083_44	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2083083_44	UniRef90	UniRef90_UPI001C37881F	NUMOD4 domain-containing protein	NA
UHGV-2083083_44	eggNOG-mapper	679190.HMPREF0650_0103	NUMOD4 motif	NA
UHGV-2083083_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2083083_44	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2083083_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2083083_44	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-2083083_45	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2083083_45	PHROG	phrog_363	DNA methyltransferase	other
UHGV-2083083_45	UniRef90	UniRef90_UPI001E2B78BF	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2083083_45	eggNOG-mapper	1121098.HMPREF1534_01082	C-5 cytosine-specific DNA methylase	NA
UHGV-2083083_45	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2083083_45	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2083083_45	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2083083_45	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2083083_45	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2083083_48	PHROG	phrog_19578	NA	unknown function
UHGV-2083083_48	eggNOG-mapper	1268240.ATFI01000007_gene437	NA	NA
UHGV-2083083_48	Structural annotation	PF09827, MF_01471	NA	NA
UHGV-2083083_49	PHROG	phrog_35728	NA	unknown function
UHGV-2083083_49	eggNOG-mapper	585502.HMPREF0645_2611	NA	NA
UHGV-2083083_50	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2083083_50	PHROG	phrog_9438	anti-repressor	transcription regulation
UHGV-2083083_50	UniRef90	UniRef90_A0A374URW2	KilA-N domain-containing protein	NA
UHGV-2083083_50	eggNOG-mapper	1236504.HMPREF2132_11510	BRO family, N-terminal domain	NA
UHGV-2083083_50	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-2083083_50	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2083083_50	COG	COG3617	Prophage antirepressor	NA
UHGV-2083083_50	Structural annotation	PF03374, COG3645	NA	NA
UHGV-2083083_51	UniRef90	UniRef90_UPI001C378A79	antA/AntB antirepressor family protein	NA
UHGV-2083083_51	eggNOG-mapper	1235803.C825_02646	BRO family, N-terminal domain	NA
UHGV-2083083_51	COG	COG3617	Prophage antirepressor	NA
UHGV-2083083_51	Structural annotation	PF08346, COG3561	NA	NA
UHGV-2083083_54	PHROG	phrog_824	NA	unknown function
UHGV-2083083_54	UniRef90	UniRef90_UPI001F1700CC	VRR-NUC domain-containing protein	NA
UHGV-2083083_54	eggNOG-mapper	1122931.AUAE01000005_gene3274	VRR_NUC	NA
UHGV-2083083_54	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2083083_54	Structural annotation	PF08774	NA	NA
UHGV-2083083_56	eggNOG-mapper	411901.BACCAC_02347	NA	NA
UHGV-2083083_58	PHROG	phrog_19572	NA	unknown function
UHGV-2083083_58	UniRef90	UniRef90_UPI000E46A408	NA	NA
UHGV-2083083_58	eggNOG-mapper	1227276.HMPREF9148_02498	COG NOG14445 non supervised orthologous group	NA
UHGV-2083083_58	Pfam	PF14902	NA	DUF4494
UHGV-2083083_58	Structural annotation	PF14902, COG2157	NA	NA
UHGV-2083083_59	PHROG	phrog_36980	NA	unknown function
UHGV-2083083_59	eggNOG-mapper	1268240.ATFI01000008_gene2556	NA	NA
UHGV-2083083_60	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-2083083_60	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2083083_60	UniRef90	UniRef90_A0A414Q850	YqaJ domain-containing protein	NA
UHGV-2083083_60	eggNOG-mapper	411901.BACCAC_02351	YqaJ-like viral recombinase domain	NA
UHGV-2083083_60	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2083083_60	Structural annotation	TIGR03033, COG5377	NA	NA
UHGV-2083083_61	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2083083_61	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2083083_61	UniRef90	UniRef90_A0A414Q837	Recombinase RecT	NA
UHGV-2083083_61	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-2083083_61	Pfam	PF03837	RecT family	RecT
UHGV-2083083_61	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2083083_61	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2083083_61	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2083083_63	PHROG	phrog_1492	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2083083_63	UniRef90	UniRef90_UPI001F03B0B1	NUMOD4 domain-containing protein	NA
UHGV-2083083_63	eggNOG-mapper	537874.B3GVX7_9CAUD	HNH endonuclease	NA
UHGV-2083083_63	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2083083_64	PHROG	phrog_11581	NA	unknown function
UHGV-2083083_64	eggNOG-mapper	457424.BFAG_02391	NA	NA
UHGV-2083083_65	PHROG	phrog_11581	NA	unknown function
UHGV-2083083_65	eggNOG-mapper	470145.BACCOP_01179	NA	NA
UHGV-2083083_66	PHROG	phrog_4284	NA	unknown function
UHGV-2083083_66	UniRef90	UniRef90_UPI00189D28CD	GIY-YIG nuclease family protein	NA
UHGV-2083083_66	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2083083_67	UniRef90	UniRef90_UPI001C378A79	antA/AntB antirepressor family protein	NA
UHGV-2083083_67	eggNOG-mapper	1235803.C825_02646	BRO family, N-terminal domain	NA
UHGV-2083083_67	COG	COG3617	Prophage antirepressor	NA
UHGV-2083083_67	Structural annotation	PF08346, COG3561	NA	NA
UHGV-2083083_68	eggNOG-mapper	1268240.ATFI01000007_gene444	NA	NA
UHGV-2083083_69	UniRef90	UniRef90_UPI000E54150D	helix-turn-helix domain-containing protein	NA
UHGV-2083083_69	eggNOG-mapper	742727.HMPREF9447_04898	Helix-turn-helix domain	NA
UHGV-2083083_69	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2083083_69	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2083083_69	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2083083_76	UniRef90	UniRef90_A0A7K1X815	HTH cro/C1-type domain-containing protein	NA
UHGV-2083083_76	eggNOG-mapper	742767.HMPREF9456_02035	Transcriptional regulator	NA
UHGV-2083083_76	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2083083_76	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2083083_78	eggNOG-mapper	742727.HMPREF9447_04901	NA	NA