UHGV-2083438

Genome information

Genome length 38,779 bps

CDS count 53

Completeness 94.27% (high-quality)

geNomad score 0.9689

Prediction confidence Confident

Genome information
Genome ID	UHGV-2083438
vOTU ID	vOTU-012500
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029472\|Ga0244197_100098\|provirus_22063_69023
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9689
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.29
Jumbo phage	No

Genome content
Genome length	38,779 bps
GC content	46.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.42%
Average CDS length	678.96 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2083438_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2083438_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2083438_1	UniRef90	UniRef90_A0A174S1P9	Resolvase, N terminal domain	NA
UHGV-2083438_1	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2083438_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2083438_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2083438_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2083438_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2083438_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2083438_2	eggNOG-mapper	1235835.C814_03388	NA	NA
UHGV-2083438_3	UniRef90	UniRef90_UPI0011062393	tetratricopeptide repeat protein	NA
UHGV-2083438_3	Structural annotation	PF21170, NF040959, COG1729	NA	NA
UHGV-2083438_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2083438_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2083438_5	UniRef90	UniRef90_A0A174S783	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-2083438_5	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-2083438_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2083438_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2083438_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2083438_6	eggNOG-mapper	397290.C810_05154	NA	NA
UHGV-2083438_8	eggNOG-mapper	1123399.AQVE01000012_gene2935	NA	NA
UHGV-2083438_8	Structural annotation	PF20344, COG3975	NA	NA
UHGV-2083438_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2083438_9	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2083438_9	UniRef90	UniRef90_A0A174S919	Phage anti-repressor protein	NA
UHGV-2083438_9	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-2083438_9	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2083438_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2083438_9	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2083438_9	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2083438_11	eggNOG-mapper	883156.HMPREF9282_01215	NA	NA
UHGV-2083438_11	Structural annotation	NF040556	NA	NA
UHGV-2083438_14	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-2083438_14	Structural annotation	PF13384, COG1710	NA	NA
UHGV-2083438_17	PHROG	phrog_674	NA	unknown function
UHGV-2083438_17	UniRef90	UniRef90_A0A416ZL44	NA	NA
UHGV-2083438_17	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-2083438_17	Pfam	PF07083	NA	DUF1351
UHGV-2083438_17	Structural annotation	PF07083	NA	NA
UHGV-2083438_18	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2083438_18	UniRef90	UniRef90_A0A174S6P0	ERF superfamily	NA
UHGV-2083438_18	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-2083438_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-2083438_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2083438_18	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2083438_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2083438_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2083438_19	UniRef90	UniRef90_A0A174S775	Single-stranded DNA-binding protein	NA
UHGV-2083438_19	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2083438_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2083438_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2083438_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2083438_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2083438_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2083438_20	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2083438_20	UniRef90	UniRef90_A0A416AFS0	NA	NA
UHGV-2083438_20	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-2083438_20	Pfam	PF06356	NA	DUF1064
UHGV-2083438_20	Structural annotation	PF06356	NA	NA
UHGV-2083438_21	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2083438_21	UniRef90	UniRef90_A0A174S3H8	Phage replisome organizer, putative, N-terminal region	NA
UHGV-2083438_21	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-2083438_21	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2083438_21	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2083438_21	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-2083438_23	Structural annotation	PF18350, MF_00369, COG2139	NA	NA
UHGV-2083438_24	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2083438_24	UniRef90	UniRef90_D7GWI5	NA	NA
UHGV-2083438_24	eggNOG-mapper	658655.HMPREF0988_02575	NA	NA
UHGV-2083438_25	PHROG	phrog_6568	NA	unknown function
UHGV-2083438_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2083438_26	UniRef90	UniRef90_A0A396PDK7	NA	NA
UHGV-2083438_26	eggNOG-mapper	97139.C824_05976	sigma factor activity	NA
UHGV-2083438_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2083438_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2083438_26	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2083438_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2083438_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2083438_27	UniRef90	UniRef90_A0A417WXA6	Terminase small subunit	NA
UHGV-2083438_27	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-2083438_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2083438_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2083438_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2083438_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2083438_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2083438_28	UniRef90	UniRef90_A0A174S812	Phage terminase, large subunit, PBSX family	NA
UHGV-2083438_28	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-2083438_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2083438_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2083438_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2083438_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2083438_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2083438_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-2083438_29	UniRef90	UniRef90_A0A373P643	Phage portal protein	NA
UHGV-2083438_29	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-2083438_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2083438_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2083438_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2083438_30	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2083438_30	UniRef90	UniRef90_A0A396P1E8	Phage_Mu_F domain-containing protein	NA
UHGV-2083438_30	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2083438_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2083438_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2083438_30	COG	COG2369	NA	NA
UHGV-2083438_30	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-2083438_32	PHROG	phrog_3675	NA	unknown function
UHGV-2083438_32	UniRef90	UniRef90_A0A174SAX8	YjcQ protein	NA
UHGV-2083438_32	eggNOG-mapper	1321784.HMPREF1987_01070	YjcQ protein	NA
UHGV-2083438_32	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2083438_32	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-2083438_33	KOfam	K07584	NA	NA
UHGV-2083438_33	PHROG	phrog_4478	peptidase	other
UHGV-2083438_33	UniRef90	UniRef90_A0A373P5W7	Ribosomal-processing cysteine protease Prp	NA
UHGV-2083438_33	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-2083438_33	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2083438_33	COG	COG2868	NA	NA
UHGV-2083438_33	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2083438_34	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2083438_34	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-2083438_34	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-2083438_34	Pfam	PF14265	NA	DUF4355
UHGV-2083438_34	Structural annotation	PF14265	NA	NA
UHGV-2083438_35	PHROG	phrog_544	major head protein	head and packaging
UHGV-2083438_35	UniRef90	UniRef90_A0A174PKI4	S-l_SbsC_C domain-containing protein	NA
UHGV-2083438_35	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2083438_35	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2083438_35	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2083438_36	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-2083438_36	UniRef90	UniRef90_UPI00189B7272	Rho termination protein	NA
UHGV-2083438_36	eggNOG-mapper	1197953.I6T7M8_9CAUD	DNA-dependent transcription, termination	NA
UHGV-2083438_37	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2083438_37	UniRef90	UniRef90_A0A174PRY0	Phage gp6-like head-tail connector protein	NA
UHGV-2083438_37	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-2083438_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2083438_37	Structural annotation	PF05135	NA	NA
UHGV-2083438_38	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2083438_38	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2083438_38	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2083438_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2083438_39	UniRef90	UniRef90_A0A174PPX0	Phage protein, HK97 gp10 family	NA
UHGV-2083438_39	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2083438_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2083438_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2083438_39	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2083438_40	PHROG	phrog_176	tail terminator	connector
UHGV-2083438_40	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-2083438_40	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2083438_40	Structural annotation	PF11367	NA	NA
UHGV-2083438_41	PHROG	phrog_238	major tail protein	tail
UHGV-2083438_41	UniRef90	UniRef90_A0A174PKY3	Phage major tail protein, TP901-1 family	NA
UHGV-2083438_41	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2083438_41	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2083438_41	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2083438_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2083438_42	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2083438_42	UniRef90	UniRef90_A0A174PQ19	NA	NA
UHGV-2083438_42	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-2083438_42	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2083438_42	Structural annotation	PF12363	NA	NA
UHGV-2083438_43	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2083438_43	eggNOG-mapper	476272.RUMHYD_02862	NA	NA
UHGV-2083438_44	PHROG	phrog_19074	NA	unknown function
UHGV-2083438_44	UniRef90	UniRef90_A0A373P5X4	Phage tail tape measure protein	NA
UHGV-2083438_44	eggNOG-mapper	411462.DORLON_00777	Phage-related minor tail protein	NA
UHGV-2083438_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2083438_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2083438_44	COG	COG5283	Phage-related tail protein	NA
UHGV-2083438_44	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2083438_45	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2083438_45	UniRef90	UniRef90_A0A174PQE5	Phage-related protein	NA
UHGV-2083438_45	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-2083438_45	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2083438_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2083438_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-2083438_45	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2083438_46	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-2083438_46	PHROG	phrog_9478	minor tail protein	tail
UHGV-2083438_46	UniRef90	UniRef90_A0A417WX86	Peptidase S74 domain-containing protein	NA
UHGV-2083438_46	eggNOG-mapper	543734.LCABL_13420	cellulase activity	NA
UHGV-2083438_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2083438_46	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-2083438_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2083438_46	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2083438_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2083438_46	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2083438_47	PHROG	phrog_2566	NA	unknown function
UHGV-2083438_48	PHROG	phrog_4105	NA	unknown function
UHGV-2083438_48	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2083438_49	PHROG	phrog_1129	holin	lysis
UHGV-2083438_49	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-2083438_49	eggNOG-mapper	1232453.BAIF02000030_gene2527	NA	NA
UHGV-2083438_49	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2083438_49	Structural annotation	PF16079	NA	NA
UHGV-2083438_50	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2083438_50	PHROG	phrog_3088	amidase	lysis
UHGV-2083438_50	UniRef90	UniRef90_UPI001C025321	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2083438_50	eggNOG-mapper	742740.HMPREF9474_01195	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2083438_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2083438_50	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2083438_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2083438_50	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA
UHGV-2083438_51	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-2083438_51	PHROG	phrog_7573	NA	unknown function
UHGV-2083438_51	UniRef90	UniRef90_R7JVK4	Mn-containing catalase	NA
UHGV-2083438_51	eggNOG-mapper	180332.JTGN01000007_gene3665	PFAM Manganese containing catalase	NA
UHGV-2083438_51	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-2083438_51	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-2083438_51	Structural annotation	PF05067, MF_00931, TIGR04535, COG3546	NA	NA
UHGV-2083438_52	PHROG	phrog_1129	holin	lysis
UHGV-2083438_52	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-2083438_52	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-2083438_52	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2083438_52	Structural annotation	PF16079	NA	NA
UHGV-2083438_53	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2083438_53	PHROG	phrog_3088	amidase	lysis
UHGV-2083438_53	UniRef90	UniRef90_A0A174NGB2	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-2083438_53	eggNOG-mapper	742740.HMPREF9474_01195	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2083438_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2083438_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2083438_53	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA