UHGV-2083648

Genome information

Genome length 53,640 bps

CDS count 61

Completeness 72.58% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-2083648
vOTU ID	vOTU-018166
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029447\|Ga0243899_1000265\|provirus_4038_57677
BioSample	SAMN05971611
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.21
Jumbo phage	No

Genome content
Genome length	53,640 bps
GC content	61.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.43%
Average CDS length	815.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2083648_1	eggNOG-mapper	1519439.JPJG01000011_gene53	NA	NA
UHGV-2083648_1	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-2083648_1	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-2083648_4	PHROG	phrog_10091	holin	lysis
UHGV-2083648_4	UniRef90	UniRef90_R5MCL9	Holin phage phi LC3 family	NA
UHGV-2083648_4	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-2083648_4	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2083648_4	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2083648_4	COG	COG5546	NA	NA
UHGV-2083648_4	Structural annotation	COG5546	NA	NA
UHGV-2083648_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2083648_5	PHROG	phrog_5182	endolysin	lysis
UHGV-2083648_5	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-2083648_5	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2083648_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2083648_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2083648_5	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2083648_6	PHROG	phrog_27545	NA	unknown function
UHGV-2083648_6	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-2083648_6	eggNOG-mapper	478749.BRYFOR_07638	NA	NA
UHGV-2083648_6	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2083648_7	KOfam	K23455	COL8A; collagen type VIII alpha	NA
UHGV-2083648_7	PHROG	phrog_5073	tail fiber protein	tail
UHGV-2083648_7	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2083648_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-2083648_8	Structural annotation	PF00629, NF033675	NA	NA
UHGV-2083648_10	PHROG	phrog_38190	NA	unknown function
UHGV-2083648_10	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-2083648_12	Structural annotation	PF10651, NF038186	NA	NA
UHGV-2083648_13	PHROG	phrog_28766	tail fiber protein	tail
UHGV-2083648_14	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-2083648_14	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-2083648_14	Structural annotation	PF11134, MF_00923, TIGR02217, TIGR04312, TIGR03511, COG5276, COG5448	NA	NA
UHGV-2083648_15	PHROG	phrog_13046	NA	unknown function
UHGV-2083648_15	Structural annotation	PF20387	NA	NA
UHGV-2083648_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-2083648_16	UniRef90	UniRef90_A0A5D4RB37	N4-gp56 family major capsid protein	NA
UHGV-2083648_16	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-2083648_16	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2083648_18	PHROG	phrog_156	portal protein	head and packaging
UHGV-2083648_18	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-2083648_18	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2083648_20	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2083648_20	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-2083648_20	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-2083648_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2083648_20	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2083648_20	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2083648_20	COG	COG5362	Phage terminase large subunit	NA
UHGV-2083648_20	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2083648_22	PHROG	phrog_16683	NA	unknown function
UHGV-2083648_22	UniRef90	UniRef90_E9SAB4	LIM zinc-binding domain-containing protein	NA
UHGV-2083648_22	eggNOG-mapper	246199.CUS_4789	NA	NA
UHGV-2083648_22	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2083648_22	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-2083648_27	UniRef90	UniRef90_A0A662S5F4	Glutamine amidotransferase type-2 domain-containing protein	NA
UHGV-2083648_27	Structural annotation	PF13230, MF_01931, TIGR01134, COG0121	NA	NA
UHGV-2083648_29	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2083648_29	UniRef90	UniRef90_A0A1Y4MPX2	VRR-NUC domain-containing protein	NA
UHGV-2083648_29	eggNOG-mapper	457415.HMPREF1006_00447	VRR-NUC domain protein	NA
UHGV-2083648_29	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-2083648_30	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2083648_30	UniRef90	UniRef90_UPI00189D451C	virulence-associated E family protein	NA
UHGV-2083648_30	eggNOG-mapper	1134413.ANNK01000054_gene2222	Virulence-associated protein E	NA
UHGV-2083648_30	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2083648_30	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2083648_30	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2083648_40	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2083648_40	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2083648_40	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2083648_40	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-2083648_40	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2083648_40	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2083648_40	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2083648_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2083648_40	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-2083648_43	UniRef90	UniRef90_UPI001A9B9FB4	FAD-dependent thymidylate synthase	NA
UHGV-2083648_43	eggNOG-mapper	742735.HMPREF9467_00909	NA	NA
UHGV-2083648_43	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-2083648_43	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-2083648_44	PHROG	phrog_474	phosphofructokinase	other
UHGV-2083648_44	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-2083648_44	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-2083648_44	Pfam	PF19905	NA	DUF6378
UHGV-2083648_45	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2083648_45	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2083648_46	PHROG	phrog_24386	NA	unknown function
UHGV-2083648_46	eggNOG-mapper	1280679.ATVX01000028_gene1837	UMP catabolic process	NA
UHGV-2083648_46	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-2083648_46	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-2083648_47	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2083648_47	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2083648_47	UniRef90	UniRef90_A0A3G9J1T4	DEAD/DEAH box helicase	NA
UHGV-2083648_47	eggNOG-mapper	1296660.S5MA26_9CAUD	Type III restriction enzyme, res subunit	NA
UHGV-2083648_47	PADLOC	DpdE_00012	DpdE	DPD
UHGV-2083648_47	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2083648_47	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2083648_47	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2083648_49	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2083648_49	PHROG	phrog_30550	NA	unknown function
UHGV-2083648_49	UniRef90	UniRef90_A0A6N9PX25	Cell wall hydrolase	NA
UHGV-2083648_49	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-2083648_49	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2083648_49	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2083648_51	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2083648_51	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2083648_51	UniRef90	UniRef90_A4J3S2	DNA-directed DNA polymerase	NA
UHGV-2083648_51	eggNOG-mapper	349161.Dred_1191	DNA polymerase	NA
UHGV-2083648_51	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2083648_51	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2083648_51	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2083648_52	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2083648_52	UniRef90	UniRef90_UPI001C1238FC	NA	NA
UHGV-2083648_52	eggNOG-mapper	743719.PaelaDRAFT_2379	NA	NA
UHGV-2083648_52	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2083648_52	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2083648_53	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2083648_53	UniRef90	UniRef90_UPI001A9ACF4A	NA	NA
UHGV-2083648_53	eggNOG-mapper	591001.Acfer_1134	NA	NA
UHGV-2083648_53	Pfam	PF10926	NA	DUF2800
UHGV-2083648_53	COG	COG2887	RecB family exonuclease	NA
UHGV-2083648_53	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2083648_55	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2083648_55	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2083648_58	eggNOG-mapper	1280679.ATVX01000003_gene3145	neuron death in response to oxidative stress	NA
UHGV-2083648_58	COG	COG1864	DNA/RNA endonuclease G, NUC1	NA
UHGV-2083648_59	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2083648_59	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2083648_59	UniRef90	UniRef90_R6Q8R6	Repressor LexA	NA
UHGV-2083648_59	eggNOG-mapper	879308.HMPREF9130_0437	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-2083648_59	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2083648_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2083648_59	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2083648_59	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2083648_59	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2083648_61	KOfam	K14059	int; integrase	NA
UHGV-2083648_61	PHROG	phrog_1	integrase	integration and excision
UHGV-2083648_61	UniRef90	UniRef90_A0A416ZBA5	Site-specific integrase	NA
UHGV-2083648_61	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-2083648_61	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2083648_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2083648_61	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2083648_61	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA