UHGV-2083720

Genome information

Genome length 65,966 bps

CDS count 77

Completeness 93.43% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-2083720
vOTU ID	vOTU-060166
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029462\|Ga0244093_100023\|provirus_67922_138885
BioSample	SAMEA3708498
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.43% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.1
Jumbo phage	No

Genome content
Genome length	65,966 bps
GC content	42.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	89.81%
Average CDS length	772.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2083720_1	KOfam	K15530	RGAE; rhamnogalacturonan acetylesterase [EC:3.1.1.86]	NA
UHGV-2083720_1	UniRef90	UniRef90_D1PFI3	GDSL-like protein	NA
UHGV-2083720_1	eggNOG-mapper	537011.PREVCOP_05991	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-2083720_1	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2083720_1	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2083720_3	Structural annotation	PF10043, NF008028, COG5652	NA	NA
UHGV-2083720_4	PHROG	phrog_3878	NA	unknown function
UHGV-2083720_4	UniRef90	UniRef90_A0A015ZJM6	Putative membrane protein	NA
UHGV-2083720_4	eggNOG-mapper	619693.HMPREF6745_2505	NA	NA
UHGV-2083720_5	PHROG	phrog_6437	NA	unknown function
UHGV-2083720_6	UniRef90	UniRef90_UPI000C15ACB8	helix-turn-helix domain-containing protein	NA
UHGV-2083720_6	eggNOG-mapper	997884.HMPREF1068_03266	NA	NA
UHGV-2083720_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2083720_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2083720_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2083720_10	eggNOG-mapper	1227276.HMPREF9148_00167	NA	NA
UHGV-2083720_11	eggNOG-mapper	36875.HQ29_02645	NA	NA
UHGV-2083720_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2083720_12	PHROG	phrog_14770	NA	unknown function
UHGV-2083720_12	UniRef90	UniRef90_UPI001F2E7397	DNA cytosine methyltransferase	NA
UHGV-2083720_12	eggNOG-mapper	1347393.HG726020_gene1834	CRISPR-associated helicase, Cas3	NA
UHGV-2083720_12	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-2083720_12	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-2083720_12	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-2083720_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2083720_12	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-2083720_12	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-2083720_14	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-2083720_15	PHROG	phrog_16490	NA	unknown function
UHGV-2083720_15	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-2083720_15	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-2083720_17	PHROG	phrog_28898	NA	unknown function
UHGV-2083720_17	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-2083720_17	Structural annotation	PF10781	NA	NA
UHGV-2083720_19	PHROG	phrog_38431	NA	unknown function
UHGV-2083720_19	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-2083720_19	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-2083720_20	eggNOG-mapper	411901.BACCAC_01107	NA	NA
UHGV-2083720_22	KOfam	K13730	inlA; internalin A	NA
UHGV-2083720_22	Structural annotation	NF033190, COG4886	NA	NA
UHGV-2083720_23	PHROG	phrog_27151	NA	unknown function
UHGV-2083720_23	UniRef90	UniRef90_UPI0013D1DF92	CotH kinase family protein	NA
UHGV-2083720_23	eggNOG-mapper	1233951.IO90_08605	CotH kinase protein	NA
UHGV-2083720_23	Pfam	PF08757	CotH kinase protein	CotH
UHGV-2083720_23	Structural annotation	PF08757, COG5337	NA	NA
UHGV-2083720_24	Structural annotation	PF17994	NA	NA
UHGV-2083720_25	PHROG	phrog_22135	NA	unknown function
UHGV-2083720_25	Structural annotation	PF17212	NA	NA
UHGV-2083720_27	PHROG	phrog_26635	NA	unknown function
UHGV-2083720_27	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-2083720_28	PHROG	phrog_22323	NA	unknown function
UHGV-2083720_28	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-2083720_29	PHROG	phrog_156	portal protein	head and packaging
UHGV-2083720_29	eggNOG-mapper	563031.HMPREF0666_01151	NA	NA
UHGV-2083720_29	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2083720_31	Structural annotation	PF02368	NA	NA
UHGV-2083720_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2083720_34	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-2083720_34	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-2083720_34	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-2083720_34	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2083720_35	PHROG	phrog_32516	NA	unknown function
UHGV-2083720_35	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-2083720_35	Structural annotation	PF11134, COG2706	NA	NA
UHGV-2083720_36	PHROG	phrog_27246	NA	unknown function
UHGV-2083720_38	PHROG	phrog_20732	NA	unknown function
UHGV-2083720_38	UniRef90	UniRef90_UPI000C787A6F	phage holin family protein	NA
UHGV-2083720_38	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-2083720_38	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2083720_39	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2083720_39	PHROG	phrog_822	amidase	lysis
UHGV-2083720_39	UniRef90	UniRef90_K1SWX0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2083720_39	eggNOG-mapper	1127696.HMPREF9134_00800	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2083720_39	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2083720_39	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2083720_39	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-2083720_40	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-2083720_41	UniRef90	UniRef90_A0A3E5E9F8	DNA-binding protein	NA
UHGV-2083720_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2083720_41	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2083720_41	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-2083720_42	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2083720_42	UniRef90	UniRef90_A0A3E5E9I6	Class I SAM-dependent methyltransferase	NA
UHGV-2083720_42	eggNOG-mapper	1121098.HMPREF1534_01090	Methyltransferase domain	NA
UHGV-2083720_42	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2083720_42	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-2083720_42	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-2083720_46	UniRef90	UniRef90_A0A3R6ENN9	Fructan hydrolase	NA
UHGV-2083720_46	eggNOG-mapper	457424.BFAG_01596	NA	NA
UHGV-2083720_52	PHROG	phrog_874	NA	unknown function
UHGV-2083720_52	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-2083720_52	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2083720_54	PHROG	phrog_419	NA	unknown function
UHGV-2083720_54	eggNOG-mapper	431943.CKL_3242	NA	NA
UHGV-2083720_54	Structural annotation	PF14083	NA	NA
UHGV-2083720_57	Structural annotation	PF09465, NF005100	NA	NA
UHGV-2083720_64	Structural annotation	PF20338	NA	NA
UHGV-2083720_65	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2083720_65	eggNOG-mapper	629265.PMA4326_09935	NA	NA
UHGV-2083720_65	COG	COG3756	NA	NA
UHGV-2083720_66	eggNOG-mapper	1347393.HG726021_gene517	NA	NA
UHGV-2083720_66	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2083720_67	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2083720_67	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2083720_67	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-2083720_67	eggNOG-mapper	1235788.C802_00050	Metallo-beta-lactamase superfamily	NA
UHGV-2083720_67	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2083720_67	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2083720_67	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-2083720_68	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2083720_68	UniRef90	UniRef90_UPI00164BBA84	NUMOD4 domain-containing protein	NA
UHGV-2083720_68	eggNOG-mapper	1458851.X2KXT0_9CAUD	HNH endonuclease	NA
UHGV-2083720_68	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2083720_68	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2083720_68	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2083720_68	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-2083720_69	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2083720_69	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2083720_69	UniRef90	UniRef90_A0A646FUA9	Recombinase	NA
UHGV-2083720_69	eggNOG-mapper	445970.ALIPUT_02693	Recombinase, phage RecT family	NA
UHGV-2083720_69	Pfam	PF03837	RecT family	RecT
UHGV-2083720_69	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2083720_69	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2083720_69	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2083720_70	Structural annotation	PF18300, COG5475	NA	NA
UHGV-2083720_71	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2083720_71	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2083720_71	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-2083720_71	eggNOG-mapper	1121285.AUFK01000002_gene9	nuclear chromosome segregation	NA
UHGV-2083720_71	Pfam	PF13476	AAA domain	AAA_23
UHGV-2083720_71	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2083720_71	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2083720_73	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2083720_73	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2083720_73	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-2083720_73	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-2083720_73	Pfam	PF00692	dUTPase	dUTPase
UHGV-2083720_73	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2083720_73	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-2083720_74	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2083720_74	UniRef90	UniRef90_F3PTM5	HNH endonuclease domain protein	NA
UHGV-2083720_74	eggNOG-mapper	763034.HMPREF9446_02093	HNH endonuclease domain protein	NA
UHGV-2083720_74	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2083720_74	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2083720_74	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2083720_74	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-2083720_75	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2083720_75	UniRef90	UniRef90_A0A1I2SYN3	Bacteriophage Lambda NinG protein	NA
UHGV-2083720_75	eggNOG-mapper	585502.HMPREF0645_2608	NA	NA
UHGV-2083720_75	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-2083720_75	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2083720_75	Structural annotation	PF05766	NA	NA
UHGV-2083720_76	PHROG	phrog_16858	NA	unknown function
UHGV-2083720_76	UniRef90	UniRef90_A0A3D6B2E4	ArsR family transcriptional regulator	NA
UHGV-2083720_77	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2083720_77	UniRef90	UniRef90_A0A3R5ZKQ5	XRE family transcriptional regulator	NA
UHGV-2083720_77	eggNOG-mapper	886379.AEWI01000013_gene2144	Helix-turn-helix XRE-family like proteins	NA
UHGV-2083720_77	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2083720_77	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA