UHGV-2084664

Genome information

Genome length 35,847 bps

CDS count 49

Completeness 95.00% (high-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-2084664
vOTU ID	vOTU-010392
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029455\|Ga0244160_100001\|provirus_374751_410597
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.00% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.87
Jumbo phage	No

Genome content
Genome length	35,847 bps
GC content	36.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	88.65%
Average CDS length	649.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2084664_1	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-2084664_1	PHROG	phrog_3513	endolysin	lysis
UHGV-2084664_1	UniRef90	UniRef90_A0A3D5LQR9	Muramidase (Flagellum-specific)	NA
UHGV-2084664_1	eggNOG-mapper	411902.CLOBOL_03862	COG NOG16320 non supervised orthologous group	NA
UHGV-2084664_1	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2084664_1	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-2084664_1	Structural annotation	PF01157, MF_01354, NF009358, NF003303, COG1705, COG2139	NA	NA
UHGV-2084664_2	PHROG	phrog_199	holin	lysis
UHGV-2084664_2	UniRef90	UniRef90_A0A3D5LQS4	Holin	NA
UHGV-2084664_2	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-2084664_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2084664_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2084664_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2084664_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2084664_3	PHROG	phrog_2566	NA	unknown function
UHGV-2084664_3	eggNOG-mapper	762550.LEGAS_1574	NA	NA
UHGV-2084664_4	PHROG	phrog_6616	tail protein	tail
UHGV-2084664_4	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-2084664_4	COG	COG4926	Phage-related protein	NA
UHGV-2084664_4	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2084664_5	PHROG	phrog_1401	NA	unknown function
UHGV-2084664_5	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-2084664_5	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-2084664_5	Structural annotation	PF07761	NA	NA
UHGV-2084664_6	PHROG	phrog_1194	NA	unknown function
UHGV-2084664_6	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2084664_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2084664_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2084664_7	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-2084664_7	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2084664_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2084664_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2084664_8	PHROG	phrog_8355	NA	unknown function
UHGV-2084664_8	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-2084664_8	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-2084664_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2084664_8	Structural annotation	PF06854	NA	NA
UHGV-2084664_9	PHROG	phrog_8300	NA	unknown function
UHGV-2084664_9	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-2084664_9	Structural annotation	PF06896	NA	NA
UHGV-2084664_10	PHROG	phrog_820	major tail protein	tail
UHGV-2084664_10	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-2084664_10	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-2084664_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2084664_11	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2084664_11	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-2084664_11	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-2084664_11	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2084664_11	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2084664_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2084664_12	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-2084664_13	PHROG	phrog_8710	NA	unknown function
UHGV-2084664_13	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-2084664_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2084664_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2084664_14	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-2084664_15	PHROG	phrog_1378	NA	unknown function
UHGV-2084664_15	eggNOG-mapper	1415775.U729_2606	NA	NA
UHGV-2084664_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-2084664_16	UniRef90	UniRef90_A0A356C4N2	Capsid protein	NA
UHGV-2084664_16	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-2084664_17	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2084664_17	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-2084664_19	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2084664_19	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-2084664_19	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-2084664_19	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2084664_19	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2084664_19	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2084664_19	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2084664_19	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-2084664_21	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2084664_21	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-2084664_21	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-2084664_21	Pfam	PF14359	NA	DUF4406
UHGV-2084664_21	Structural annotation	PF14359	NA	NA
UHGV-2084664_24	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2084664_24	UniRef90	UniRef90_A0A174P5P1	Phage minor capsid protein 2	NA
UHGV-2084664_24	eggNOG-mapper	1234679.BN424_1855	Phage Mu protein F like protein	NA
UHGV-2084664_24	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2084664_24	COG	COG2369	NA	NA
UHGV-2084664_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2084664_25	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-2084664_25	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2084664_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2084664_25	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2084664_25	Structural annotation	PF06152	NA	NA
UHGV-2084664_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-2084664_26	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-2084664_26	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2084664_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2084664_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2084664_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2084664_27	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-2084664_27	eggNOG-mapper	1294142.CINTURNW_1023	Phage terminase, large subunit, PBSX family	NA
UHGV-2084664_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2084664_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2084664_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2084664_28	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-2084664_28	UniRef90	UniRef90_A0A1C5UE81	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2084664_28	eggNOG-mapper	1139219.I569_01387	Helix-turn-helix of insertion element transposase	NA
UHGV-2084664_28	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-2084664_28	Structural annotation	PF13022	NA	NA
UHGV-2084664_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2084664_29	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2084664_29	Structural annotation	PF02996	NA	NA
UHGV-2084664_30	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2084664_30	UniRef90	UniRef90_UPI0002D32D58	NA	NA
UHGV-2084664_30	eggNOG-mapper	1095772.CAHH01000052_gene252	NA	NA
UHGV-2084664_30	Pfam	PF14359	NA	DUF4406
UHGV-2084664_30	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-2084664_31	PHROG	phrog_15077	NA	unknown function
UHGV-2084664_31	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-2084664_31	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-2084664_31	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2084664_32	PHROG	phrog_8470	NA	unknown function
UHGV-2084664_32	UniRef90	UniRef90_UPI00164C094F	PcfJ domain-containing protein	NA
UHGV-2084664_32	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-2084664_32	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2084664_32	Structural annotation	PF14284	NA	NA
UHGV-2084664_33	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-2084664_34	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2084664_34	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2084664_34	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-2084664_34	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-2084664_34	Pfam	PF00075	RNase H	RNase_H
UHGV-2084664_34	COG	COG0328	Ribonuclease HI	NA
UHGV-2084664_34	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2084664_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2084664_35	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-2084664_35	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2084664_38	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2084664_38	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-2084664_38	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2084664_42	UniRef90	UniRef90_UPI00128BC177	NA	NA
UHGV-2084664_42	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-2084664_42	Pfam	PF05339	NA	DUF739
UHGV-2084664_42	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2084664_42	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2084664_43	UniRef90	UniRef90_A0A3D5L8I7	DNA-binding protein	NA
UHGV-2084664_44	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2084664_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2084664_44	UniRef90	UniRef90_A0A174PA31	Predicted transcriptional regulator	NA
UHGV-2084664_44	eggNOG-mapper	742735.HMPREF9467_01804	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2084664_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2084664_44	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2084664_45	PHROG	phrog_87	metallo-protease	other
UHGV-2084664_45	UniRef90	UniRef90_A0A3B9CDB4	Peptidase_M78 domain-containing protein	NA
UHGV-2084664_45	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-2084664_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2084664_45	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2084664_45	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2084664_46	UniRef90	UniRef90_UPI001C10185D	phage minor capsid protein	NA
UHGV-2084664_46	eggNOG-mapper	1123263.AUKY01000072_gene2115	NA	NA
UHGV-2084664_46	Structural annotation	PF13424, TIGR01641	NA	NA
UHGV-2084664_47	eggNOG-mapper	887929.HMP0721_1293	NA	NA
UHGV-2084664_47	Structural annotation	PF16538	NA	NA
UHGV-2084664_48	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2084664_48	UniRef90	UniRef90_UPI001593E0D0	Abi family protein	NA
UHGV-2084664_48	eggNOG-mapper	1235792.C808_03102	Abi-like protein	NA
UHGV-2084664_48	PADLOC	AbiD	AbiD	Abi
UHGV-2084664_48	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2084664_48	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2084664_48	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2084664_49	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2084664_49	PHROG	phrog_95	integrase	integration and excision
UHGV-2084664_49	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-2084664_49	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-2084664_49	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2084664_49	Pfam	PF07508	Recombinase	Recombinase
UHGV-2084664_49	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2084664_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2084664_49	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA