UHGV-2085332

Genome information

Genome length 33,592 bps

CDS count 39

Completeness 71.91% (medium-quality)

geNomad score 0.9600

Prediction confidence Confident

Genome information
Genome ID	UHGV-2085332
vOTU ID	vOTU-039815
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029486\|Ga0244145_100671\|provirus_3_33594
BioSample	SAMEA3708550
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9600
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.74
Jumbo phage	No

Genome content
Genome length	33,592 bps
GC content	47.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.29%
Average CDS length	781.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2085332_1	UniRef90	UniRef90_A0A413HU71	MarR family transcriptional regulator (Fragment)	NA
UHGV-2085332_1	eggNOG-mapper	1160721.RBI_I00481	Transcriptional regulators	NA
UHGV-2085332_1	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-2085332_2	PHROG	phrog_10988	NA	unknown function
UHGV-2085332_2	eggNOG-mapper	720554.Clocl_3670	NA	NA
UHGV-2085332_3	PHROG	phrog_2115	tail protein	tail
UHGV-2085332_3	UniRef90	UniRef90_A0A223I0Y8	DNA-cytosine methyltransferase	NA
UHGV-2085332_3	eggNOG-mapper	1121428.DESHY_10071___1	NA	NA
UHGV-2085332_3	Structural annotation	PF11836	NA	NA
UHGV-2085332_4	PHROG	phrog_88	major tail protein	tail
UHGV-2085332_4	UniRef90	UniRef90_R5GWW6	Phi13 family phage major tail protein	NA
UHGV-2085332_4	eggNOG-mapper	1120978.KB894083_gene900	phage major tail protein, phi13 family	NA
UHGV-2085332_4	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2085332_4	COG	COG5492	NA	NA
UHGV-2085332_4	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2085332_5	PHROG	phrog_78	tail terminator	connector
UHGV-2085332_5	eggNOG-mapper	498761.HM1_2876	NA	NA
UHGV-2085332_5	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2085332_6	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2085332_6	UniRef90	UniRef90_R6RVJ8	HK97 gp10 family phage protein	NA
UHGV-2085332_6	eggNOG-mapper	693746.OBV_41500	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-2085332_6	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2085332_6	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2085332_6	Structural annotation	TIGR01725	NA	NA
UHGV-2085332_7	PHROG	phrog_25	head closure Hc1	connector
UHGV-2085332_7	UniRef90	UniRef90_R6RNX0	Putative phage head-tail adaptor	NA
UHGV-2085332_7	eggNOG-mapper	573061.Clocel_3973	head-tail	NA
UHGV-2085332_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2085332_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2085332_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2085332_8	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2085332_8	UniRef90	UniRef90_A0A3D2CK45	Phage gp6-like head-tail connector protein	NA
UHGV-2085332_8	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-2085332_8	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2085332_8	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2085332_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2085332_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-2085332_9	UniRef90	UniRef90_R5GWX2	Phage major capsid protein HK97 family	NA
UHGV-2085332_9	eggNOG-mapper	1216932.CM240_0620	Phage major capsid protein, HK97 family	NA
UHGV-2085332_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2085332_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2085332_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2085332_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2085332_10	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2085332_10	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2085332_10	UniRef90	UniRef90_R5GJ44	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2085332_10	eggNOG-mapper	1216932.CM240_0619	Belongs to the peptidase S14 family	NA
UHGV-2085332_10	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2085332_10	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2085332_10	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2085332_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-2085332_11	UniRef90	UniRef90_UPI0005598979	phage portal protein	NA
UHGV-2085332_11	eggNOG-mapper	665950.HMPREF1025_02651	Phage portal protein	NA
UHGV-2085332_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2085332_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2085332_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2085332_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2085332_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2085332_12	UniRef90	UniRef90_A0A4S2AAI1	Terminase large subunit	NA
UHGV-2085332_12	eggNOG-mapper	1235800.C819_03966	Phage Terminase	NA
UHGV-2085332_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2085332_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2085332_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2085332_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2085332_14	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-2085332_14	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2085332_14	UniRef90	UniRef90_R5GNG4	GGACT domain-containing protein	NA
UHGV-2085332_14	eggNOG-mapper	1235802.C823_05283	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-2085332_14	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-2085332_14	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2085332_14	Structural annotation	PF06094, COG2105	NA	NA
UHGV-2085332_15	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2085332_15	UniRef90	UniRef90_R6RDL0	Putative amidoligase enzyme	NA
UHGV-2085332_15	eggNOG-mapper	573061.Clocel_3982	amidoligase enzyme	NA
UHGV-2085332_15	AcrCatalog	cluster_58247	NA	NA
UHGV-2085332_15	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2085332_15	Structural annotation	PF12224	NA	NA
UHGV-2085332_16	PHROG	phrog_3782	NA	unknown function
UHGV-2085332_16	UniRef90	UniRef90_A0A2R2ZJK5	Virulence-like protein	NA
UHGV-2085332_16	eggNOG-mapper	665956.HMPREF1032_02276	NA	NA
UHGV-2085332_16	AcrCatalog	cluster_14489	NA	NA
UHGV-2085332_16	Pfam	PF14192	NA	DUF4314
UHGV-2085332_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2085332_17	PHROG	phrog_38038	NA	unknown function
UHGV-2085332_17	UniRef90	UniRef90_R5GII4	Cytosine-specific methyltransferase	NA
UHGV-2085332_17	eggNOG-mapper	1235799.C818_01027	C-5 cytosine-specific DNA methylase	NA
UHGV-2085332_17	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2085332_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2085332_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2085332_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2085332_17	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2085332_18	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2085332_18	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2085332_18	UniRef90	UniRef90_R6SK58	Methyltransferase	NA
UHGV-2085332_18	eggNOG-mapper	1235799.C818_01028	DNA methylase	NA
UHGV-2085332_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2085332_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2085332_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2085332_18	COG	COG0863	DNA modification methylase	NA
UHGV-2085332_18	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2085332_19	eggNOG-mapper	1235799.C818_01029	NA	NA
UHGV-2085332_19	AcrCatalog	cluster_9768	NA	NA
UHGV-2085332_20	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2085332_20	UniRef90	UniRef90_UPI001D092ADA	P27 family phage terminase small subunit	NA
UHGV-2085332_20	eggNOG-mapper	1118057.CAGX01000043_gene499	NA	NA
UHGV-2085332_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2085332_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2085332_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2085332_21	UniRef90	UniRef90_UPI001D0605E0	NA	NA
UHGV-2085332_21	eggNOG-mapper	1216932.CM240_1403	sigma factor activity	NA
UHGV-2085332_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2085332_21	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2085332_22	PHROG	phrog_7024	NA	unknown function
UHGV-2085332_22	eggNOG-mapper	663278.Ethha_1824	NA	NA
UHGV-2085332_22	AcrCatalog	cluster_1398	NA	NA
UHGV-2085332_23	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2085332_23	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2085332_23	UniRef90	UniRef90_R5GX09	Helicase ATP-binding domain-containing protein	NA
UHGV-2085332_23	eggNOG-mapper	1235799.C818_01033	SNF2 family N-terminal domain	NA
UHGV-2085332_23	PADLOC	DpdE_00012	DpdE	DPD
UHGV-2085332_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2085332_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2085332_23	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-2085332_24	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2085332_24	UniRef90	UniRef90_R5GJ79	VRR-NUC domain-containing protein	NA
UHGV-2085332_24	eggNOG-mapper	1487921.DP68_11245	VRR-NUC domain-containing protein	NA
UHGV-2085332_24	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2085332_25	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2085332_25	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2085332_25	UniRef90	UniRef90_R5GNJ3	Phage/plasmid primase P4 family domain-containing protein	NA
UHGV-2085332_25	eggNOG-mapper	411490.ANACAC_00753	Phage plasmid primase, P4 family	NA
UHGV-2085332_25	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2085332_25	Pfam	PF19263	NA	DUF5906
UHGV-2085332_25	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2085332_25	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2085332_25	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-2085332_26	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2085332_26	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2085332_26	UniRef90	UniRef90_R6RGK5	POLAc domain-containing protein	NA
UHGV-2085332_26	eggNOG-mapper	411490.ANACAC_00756	DNA polymerase	NA
UHGV-2085332_26	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2085332_26	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2085332_26	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2085332_27	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2085332_27	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2085332_27	UniRef90	UniRef90_R6RDI1	Putative antirepressor-phage associated	NA
UHGV-2085332_27	eggNOG-mapper	411902.CLOBOL_04249	BRO family, N-terminal domain	NA
UHGV-2085332_27	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2085332_27	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2085332_27	COG	COG3617	Prophage antirepressor	NA
UHGV-2085332_27	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2085332_29	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2085332_29	UniRef90	UniRef90_UPI0003F9AA51	NA	NA
UHGV-2085332_29	eggNOG-mapper	689781.AUJX01000031_gene131	NA	NA
UHGV-2085332_29	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2085332_29	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2085332_30	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2085332_30	UniRef90	UniRef90_UPI00189CEC90	NA	NA
UHGV-2085332_30	eggNOG-mapper	411490.ANACAC_00759	NA	NA
UHGV-2085332_30	Pfam	PF10926	NA	DUF2800
UHGV-2085332_30	COG	COG2887	RecB family exonuclease	NA
UHGV-2085332_30	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2085332_31	PHROG	phrog_408	NA	unknown function
UHGV-2085332_31	UniRef90	UniRef90_A0A7X6CWK3	DNA ligase	NA
UHGV-2085332_31	eggNOG-mapper	908340.HMPREF9406_0146	NOG23194 non supervised orthologous group	NA
UHGV-2085332_32	PHROG	phrog_13787	NA	unknown function
UHGV-2085332_32	UniRef90	UniRef90_UPI00189EEDD9	ECF-type sigma factor	NA
UHGV-2085332_32	eggNOG-mapper	457415.HMPREF1006_00439	DNA-templated transcription, initiation	NA
UHGV-2085332_32	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-2085332_32	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2085332_32	Structural annotation	PF13412, MF_00959, NF006146, COG1191	NA	NA
UHGV-2085332_33	PHROG	phrog_22815	NA	unknown function
UHGV-2085332_33	eggNOG-mapper	887929.HMP0721_2437	NA	NA
UHGV-2085332_33	Pfam	PF20282	C-terminal domain 6 of the ABC-three component (ABC-3C) systems	CTD6
UHGV-2085332_33	Structural annotation	PF20282	NA	NA
UHGV-2085332_34	eggNOG-mapper	887929.HMP0721_2436	NA	NA
UHGV-2085332_34	Pfam	PF20288	ABC-three component (ABC-3C) system Middle Component 2	MC2
UHGV-2085332_34	Structural annotation	PF20288, MF_01819, NF038251, COG1846	NA	NA
UHGV-2085332_35	PHROG	phrog_1637	NA	unknown function
UHGV-2085332_35	UniRef90	UniRef90_R6SK14	AAA_23 domain-containing protein	NA
UHGV-2085332_35	eggNOG-mapper	887929.HMP0721_2435	ATPase involved in DNA repair	NA
UHGV-2085332_35	Pfam	PF13476	AAA domain	AAA_23
UHGV-2085332_35	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2085332_35	Structural annotation	PF16454, MF_00449, NF041034, COG5293	NA	NA
UHGV-2085332_36	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2085332_36	UniRef90	UniRef90_R6RV84	HTH cro/C1-type domain-containing protein	NA
UHGV-2085332_36	eggNOG-mapper	887929.HMP0721_2434	NA	NA
UHGV-2085332_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2085332_36	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2085332_36	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2085332_37	PHROG	phrog_157	transposase	integration and excision
UHGV-2085332_37	UniRef90	UniRef90_UPI000A4042C9	IS3 family transposase	NA
UHGV-2085332_37	eggNOG-mapper	1235799.C818_00765	Integrase core domain	NA
UHGV-2085332_37	Pfam	PF00665	Integrase core domain	rve
UHGV-2085332_37	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2085332_39	UniRef90	UniRef90_A0A174ZQP2	FtsX-like permease family	NA
UHGV-2085332_39	Pfam	PF02687	FtsX-like permease family	FtsX