UHGV-2085988

Genome information

Genome length 32,877 bps

CDS count 44

Completeness 92.80% (high-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-2085988
vOTU ID	vOTU-013154
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029477\|Ga0244129_100006\|provirus_207464_240340
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.03
Jumbo phage	No

Genome content
Genome length	32,877 bps
GC content	44.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.68%
Average CDS length	702.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2085988_1	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-2085988_1	PHROG	phrog_19856	NA	unknown function
UHGV-2085988_1	UniRef90	UniRef90_A0A356CZV8	Mrr_cat domain-containing protein	NA
UHGV-2085988_1	eggNOG-mapper	697329.Rumal_1169	Restriction endonuclease	NA
UHGV-2085988_1	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2085988_1	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2085988_1	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2085988_2	PHROG	phrog_10292	NA	unknown function
UHGV-2085988_2	UniRef90	UniRef90_R6T9F1	TM2 domain-containing protein	NA
UHGV-2085988_2	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-2085988_2	Pfam	PF05154	TM2 domain	TM2
UHGV-2085988_2	COG	COG2314	NA	NA
UHGV-2085988_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2085988_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2085988_3	UniRef90	UniRef90_R6T2B0	Peptidase S24-like protein	NA
UHGV-2085988_3	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-2085988_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2085988_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2085988_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2085988_3	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-2085988_4	UniRef90	UniRef90_R6TEQ2	Conserved domain protein	NA
UHGV-2085988_4	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-2085988_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2085988_5	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2085988_5	UniRef90	UniRef90_A0A373SN33	NA	NA
UHGV-2085988_5	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-2085988_5	Structural annotation	COG2250	NA	NA
UHGV-2085988_6	Structural annotation	PF01775, MF_00273, NF010188	NA	NA
UHGV-2085988_11	PHROG	phrog_38338	NA	unknown function
UHGV-2085988_11	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2085988_11	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-2085988_12	PHROG	phrog_8470	NA	unknown function
UHGV-2085988_12	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-2085988_12	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-2085988_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2085988_12	Structural annotation	PF14284	NA	NA
UHGV-2085988_13	PHROG	phrog_15609	NA	unknown function
UHGV-2085988_13	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-2085988_13	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2085988_13	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2085988_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2085988_14	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-2085988_14	eggNOG-mapper	881621.LIV_2167	Siphovirus Gp157	NA
UHGV-2085988_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2085988_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2085988_15	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2085988_15	UniRef90	UniRef90_A0A373VPJ3	ATP-binding protein (Fragment)	NA
UHGV-2085988_15	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-2085988_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-2085988_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2085988_16	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2085988_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2085988_16	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-2085988_16	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2085988_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2085988_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2085988_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2085988_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2085988_16	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2085988_17	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2085988_17	UniRef90	UniRef90_A0A373SNE0	VRR-NUC domain-containing protein	NA
UHGV-2085988_17	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-2085988_17	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2085988_17	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-2085988_18	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2085988_18	UniRef90	UniRef90_A0A373SL44	NA	NA
UHGV-2085988_18	eggNOG-mapper	1423807.BACO01000050_gene1454	NA	NA
UHGV-2085988_18	Pfam	PF05037	NA	DUF669
UHGV-2085988_18	Structural annotation	PF05037, NF004948	NA	NA
UHGV-2085988_19	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2085988_19	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2085988_19	UniRef90	UniRef90_A0A356CZ91	DNA primase	NA
UHGV-2085988_19	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-2085988_19	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2085988_19	Pfam	PF19263	NA	DUF5906
UHGV-2085988_19	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2085988_19	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2085988_19	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2085988_19	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2085988_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2085988_21	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-2085988_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2085988_23	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-2085988_23	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-2085988_23	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2085988_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2085988_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2085988_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2085988_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2085988_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2085988_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2085988_24	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-2085988_24	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2085988_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2085988_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2085988_25	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-2085988_25	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-2085988_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2085988_25	COG	COG2369	NA	NA
UHGV-2085988_25	Structural annotation	PF06152	NA	NA
UHGV-2085988_26	Structural annotation	PF12305	NA	NA
UHGV-2085988_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2085988_27	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-2085988_27	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2085988_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2085988_27	Structural annotation	PF06810	NA	NA
UHGV-2085988_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-2085988_28	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-2085988_28	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-2085988_28	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2085988_28	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2085988_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2085988_29	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2085988_29	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2085988_30	PHROG	phrog_3366	NA	unknown function
UHGV-2085988_30	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2085988_30	Pfam	PF20536	NA	DUF6751
UHGV-2085988_30	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2085988_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2085988_31	UniRef90	UniRef90_UPI00143BEF55	minor capsid protein	NA
UHGV-2085988_31	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2085988_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2085988_31	Structural annotation	PF11114	NA	NA
UHGV-2085988_32	PHROG	phrog_3266	tail completion	connector
UHGV-2085988_32	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-2085988_32	Structural annotation	PF20765	NA	NA
UHGV-2085988_33	PHROG	phrog_3099	NA	unknown function
UHGV-2085988_33	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2085988_33	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2085988_34	PHROG	phrog_11299	NA	unknown function
UHGV-2085988_34	Structural annotation	PF20378	NA	NA
UHGV-2085988_35	PHROG	phrog_706	NA	unknown function
UHGV-2085988_35	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-2085988_35	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-2085988_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2085988_35	Structural annotation	PF06854	NA	NA
UHGV-2085988_36	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2085988_36	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-2085988_36	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-2085988_36	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2085988_36	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2085988_37	PHROG	phrog_1194	NA	unknown function
UHGV-2085988_37	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-2085988_37	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2085988_38	PHROG	phrog_6616	tail protein	tail
UHGV-2085988_38	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-2085988_38	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2085988_42	PHROG	phrog_199	holin	lysis
UHGV-2085988_42	UniRef90	UniRef90_A0A5R9MH90	Phage holin family protein	NA
UHGV-2085988_42	eggNOG-mapper	887325.HMPREF0381_0407	toxin secretion phage lysis holin	NA
UHGV-2085988_42	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2085988_42	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2085988_42	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2085988_42	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2085988_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2085988_43	PHROG	phrog_7698	endolysin	lysis
UHGV-2085988_43	UniRef90	UniRef90_A0A5R9MKH3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2085988_43	eggNOG-mapper	877411.JMMA01000002_gene2384	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2085988_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2085988_43	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2085988_43	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG3807	NA	NA
UHGV-2085988_44	PHROG	phrog_4962	NA	unknown function
UHGV-2085988_44	UniRef90	UniRef90_R6U470	FRG domain protein	NA
UHGV-2085988_44	eggNOG-mapper	706433.HMPREF9430_01842	FRG	NA
UHGV-2085988_44	Pfam	PF08867	FRG domain	FRG
UHGV-2085988_44	COG	COG4127	Predicted restriction endonuclease, Mrr-cat superfamily	NA