UHGV-2086017

Genome information

Genome length 53,045 bps

CDS count 75

Completeness 91.92% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-2086017
vOTU ID	vOTU-066019
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029481\|Ga0244053_100086\|provirus_58586_111630
BioSample	SAMEA3708458
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.34
Jumbo phage	No

Genome content
Genome length	53,045 bps
GC content	40.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	85.28%
Average CDS length	607.24 bps
tRNA count	7
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2086017_1	KOfam	K01626	E2.5.1.54, aroF, aroG, aroH; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]	NA
UHGV-2086017_1	PHROG	phrog_5045	phospho-2-dehydro-3-deoxyheptonate aldolase	moron, auxiliary metabolic gene and host takeover
UHGV-2086017_1	UniRef90	UniRef90_A0A0M6X105	Phospho-2-dehydro-3-deoxyheptonate aldolase	NA
UHGV-2086017_1	eggNOG-mapper	585394.RHOM_08915	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)	NA
UHGV-2086017_1	Pfam	PF00793	DAHP synthetase I family	DAHP_synth_1
UHGV-2086017_1	NCBIFam	NF009395.0	3-deoxy-7-phosphoheptulonate synthase	NA
UHGV-2086017_1	COG	COG0722	3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase	NA
UHGV-2086017_2	KOfam	K03785	aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]	NA
UHGV-2086017_2	UniRef90	UniRef90_A0A0M6X266	3-dehydroquinate dehydratase	NA
UHGV-2086017_2	eggNOG-mapper	585394.RHOM_08910	Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate	NA
UHGV-2086017_2	Pfam	PF01487	Type I 3-dehydroquinase	DHquinase_I
UHGV-2086017_2	NCBIFam	TIGR01093.1	type I 3-dehydroquinate dehydratase	NA
UHGV-2086017_2	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-2086017_2	HAMAP	MF_00214	3-dehydroquinate dehydratase [aroD]	NA
UHGV-2086017_2	Structural annotation	PF01487, MF_00214, TIGR01093, COG0710	NA	NA
UHGV-2086017_8	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2086017_8	UniRef90	UniRef90_A0A173UEE2	Predicted transcriptional regulator	NA
UHGV-2086017_8	eggNOG-mapper	1235790.C805_00736	Transcriptional regulator	NA
UHGV-2086017_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2086017_8	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2086017_8	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2086017_9	Structural annotation	PF12993	NA	NA
UHGV-2086017_10	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2086017_10	UniRef90	UniRef90_A0A1Y4B6X9	AP2/ERF domain-containing protein	NA
UHGV-2086017_10	eggNOG-mapper	1298920.KI911353_gene2694	NA	NA
UHGV-2086017_11	eggNOG-mapper	397290.C810_01353	NA	NA
UHGV-2086017_11	Structural annotation	PF16677	NA	NA
UHGV-2086017_12	Structural annotation	PF04606	NA	NA
UHGV-2086017_17	PHROG	phrog_25639	NA	unknown function
UHGV-2086017_17	eggNOG-mapper	1282664.H354_06631	NA	NA
UHGV-2086017_18	UniRef90	UniRef90_UPI001D08650D	Com family DNA-binding transcriptional regulator	NA
UHGV-2086017_18	Pfam	PF10122	NA	Mu-like_Com
UHGV-2086017_18	Structural annotation	PF10122, COG4416	NA	NA
UHGV-2086017_19	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-2086017_19	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-2086017_19	UniRef90	UniRef90_A0A352SH31	RNA-splicing ligase RtcB	NA
UHGV-2086017_19	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-2086017_19	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-2086017_19	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-2086017_19	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-2086017_20	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2086017_20	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-2086017_20	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-2086017_20	COG	COG5410	NA	NA
UHGV-2086017_20	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2086017_21	PHROG	phrog_11237	NA	unknown function
UHGV-2086017_21	eggNOG-mapper	476272.RUMHYD_01941	NA	NA
UHGV-2086017_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-2086017_22	UniRef90	UniRef90_UPI00156EA9F5	phage portal protein	NA
UHGV-2086017_22	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2086017_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2086017_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2086017_23	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-2086017_24	PHROG	phrog_1328	major head protein	head and packaging
UHGV-2086017_24	UniRef90	UniRef90_UPI001D096CC5	NA	NA
UHGV-2086017_24	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-2086017_24	Pfam	PF17236	NA	DUF5309
UHGV-2086017_24	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2086017_24	Structural annotation	PF17236, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-2086017_25	UniRef90	UniRef90_UPI0018A0DAC6	phage head-tail connector protein	NA
UHGV-2086017_25	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-2086017_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2086017_26	PHROG	phrog_1048	NA	unknown function
UHGV-2086017_26	UniRef90	UniRef90_A0A352P8A0	NA	NA
UHGV-2086017_26	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2086017_26	Pfam	PF11195	NA	DUF2829
UHGV-2086017_26	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2086017_26	Structural annotation	PF11195	NA	NA
UHGV-2086017_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2086017_27	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-2086017_27	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-2086017_27	Structural annotation	PF14359	NA	NA
UHGV-2086017_28	UniRef90	UniRef90_A0A658JMM2	NA	NA
UHGV-2086017_28	eggNOG-mapper	658086.HMPREF0994_03843	NA	NA
UHGV-2086017_28	Pfam	PF11185	NA	DUF2971
UHGV-2086017_29	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-2086017_31	PHROG	phrog_1233	NA	unknown function
UHGV-2086017_31	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-2086017_31	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-2086017_32	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-2086017_32	AcrCatalog	cluster_24841	NA	NA
UHGV-2086017_32	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-2086017_33	Structural annotation	PF05657	NA	NA
UHGV-2086017_34	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-2086017_34	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2086017_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2086017_37	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-2086017_37	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-2086017_37	COG	COG1511	NA	NA
UHGV-2086017_38	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2086017_38	Structural annotation	PF02368, NF041740	NA	NA
UHGV-2086017_39	Structural annotation	PF04381, MF_00194, NF001460, COG2974	NA	NA
UHGV-2086017_40	UniRef90	UniRef90_UPI00164A4990	restriction endonuclease	NA
UHGV-2086017_40	Structural annotation	PF19363, PF04471, COG1787, COG3355	NA	NA
UHGV-2086017_41	PHROG	phrog_1194	NA	unknown function
UHGV-2086017_41	Pfam	PF20458	NA	DUF6711
UHGV-2086017_41	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2086017_42	PHROG	phrog_18190	NA	unknown function
UHGV-2086017_42	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-2086017_42	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-2086017_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2086017_42	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2086017_43	PHROG	phrog_17196	kinase	other
UHGV-2086017_43	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-2086017_43	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-2086017_45	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-2086017_46	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2086017_46	Structural annotation	NF040910	NA	NA
UHGV-2086017_47	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2086017_47	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2086017_47	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-2086017_47	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-2086017_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2086017_47	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2086017_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2086017_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2086017_50	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-2086017_50	UniRef90	UniRef90_A0A173RD24	ORF6N domain	NA
UHGV-2086017_50	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-2086017_50	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2086017_50	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2086017_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2086017_53	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2086017_53	UniRef90	UniRef90_A0A356C696	Bro-N domain-containing protein	NA
UHGV-2086017_53	eggNOG-mapper	525255.HMPREF0077_0424	BRO family, N-terminal domain	NA
UHGV-2086017_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2086017_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2086017_53	COG	COG3617	Prophage antirepressor	NA
UHGV-2086017_53	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-2086017_56	PHROG	phrog_26861	NA	unknown function
UHGV-2086017_56	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-2086017_56	eggNOG-mapper	1120998.AUFC01000016_gene32	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-2086017_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2086017_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2086017_56	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-2086017_58	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2086017_58	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2086017_58	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-2086017_58	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-2086017_58	Pfam	PF13476	AAA domain	AAA_23
UHGV-2086017_58	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2086017_58	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2086017_60	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-2086017_61	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2086017_61	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-2086017_61	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-2086017_61	Structural annotation	NF007351, COG3723	NA	NA
UHGV-2086017_62	PHROG	phrog_25456	NA	unknown function
UHGV-2086017_63	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2086017_63	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-2086017_63	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-2086017_63	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2086017_63	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2086017_63	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-2086017_64	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2086017_64	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-2086017_64	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-2086017_64	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2086017_65	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2086017_65	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2086017_65	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-2086017_65	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-2086017_65	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2086017_65	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2086017_65	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2086017_68	PHROG	phrog_19106	NA	unknown function
UHGV-2086017_68	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-2086017_68	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-2086017_68	Structural annotation	TIGR01453	NA	NA
UHGV-2086017_69	PHROG	phrog_11769	NA	unknown function
UHGV-2086017_69	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-2086017_69	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-2086017_69	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2086017_69	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2086017_69	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-2086017_70	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2086017_70	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2086017_70	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-2086017_70	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-2086017_70	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2086017_70	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2086017_70	COG	COG0305	Replicative DNA helicase	NA
UHGV-2086017_70	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2086017_74	PHROG	phrog_22292	NA	unknown function