UHGV-2086605

Genome information

Genome length 36,589 bps

CDS count 49

Completeness 90.28% (high-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-2086605
vOTU ID	vOTU-012616
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029514\|Ga0244787_100196\|provirus_47824_84412
BioSample	SAMEA3708638
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.2
Jumbo phage	No

Genome content
Genome length	36,589 bps
GC content	49.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	96.54%
Average CDS length	727.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2086605_1	KOfam	K14059	int; integrase	NA
UHGV-2086605_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2086605_1	UniRef90	UniRef90_UPI0006C7FDAC	site-specific integrase	NA
UHGV-2086605_1	eggNOG-mapper	1273103.NM10_03321	Belongs to the 'phage' integrase family	NA
UHGV-2086605_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2086605_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2086605_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2086605_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2086605_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2086605_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2086605_5	UniRef90	UniRef90_A0A2S0M4M7	XRE family transcriptional regulator	NA
UHGV-2086605_5	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-2086605_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2086605_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2086605_5	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-2086605_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2086605_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2086605_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2086605_6	UniRef90	UniRef90_A0A2S0MA70	Helix-turn-helix domain-containing protein	NA
UHGV-2086605_6	eggNOG-mapper	650150.ERH_0585	Helix-turn-helix XRE-family like proteins	NA
UHGV-2086605_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2086605_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2086605_10	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2086605_10	UniRef90	UniRef90_A0A2S0M9E4	HNH endonuclease	NA
UHGV-2086605_10	eggNOG-mapper	585503.HMPREF7545_1722	HNH endonuclease	NA
UHGV-2086605_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2086605_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2086605_13	PHROG	phrog_25045	NA	unknown function
UHGV-2086605_13	UniRef90	UniRef90_UPI001D005F74	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2086605_13	eggNOG-mapper	1064535.MELS_1078	LysM domain	NA
UHGV-2086605_13	Pfam	PF01476	LysM domain	LysM
UHGV-2086605_13	COG	COG1388	LysM repeat	NA
UHGV-2086605_13	Structural annotation	PF01476, MF_02014, NF010723	NA	NA
UHGV-2086605_14	UniRef90	UniRef90_UPI0006C7BBC3	helix-turn-helix domain-containing protein	NA
UHGV-2086605_14	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2086605_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2086605_16	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-2086605_16	Structural annotation	PF21578	NA	NA
UHGV-2086605_19	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2086605_19	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2086605_19	UniRef90	UniRef90_UPI001D0049DD	ParA family protein	NA
UHGV-2086605_19	eggNOG-mapper	1064535.MELS_1081	AAA domain	NA
UHGV-2086605_19	Pfam	PF13614	AAA domain	AAA_31
UHGV-2086605_19	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2086605_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2086605_20	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2086605_20	UniRef90	UniRef90_UPI001D0183D4	ParB/RepB/Spo0J family partition protein	NA
UHGV-2086605_20	eggNOG-mapper	1273103.NM10_02327	ParB-like nuclease domain	NA
UHGV-2086605_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2086605_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2086605_20	Structural annotation	PF14072, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2086605_21	PHROG	phrog_32878	NA	unknown function
UHGV-2086605_21	Structural annotation	NF041588	NA	NA
UHGV-2086605_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2086605_22	eggNOG-mapper	478749.BRYFOR_07600	sigma factor activity	NA
UHGV-2086605_22	Pfam	PF07374	NA	DUF1492
UHGV-2086605_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2086605_22	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-2086605_24	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2086605_24	UniRef90	UniRef90_UPI001D009DDB	helix-turn-helix domain-containing protein	NA
UHGV-2086605_24	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-2086605_24	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2086605_24	Structural annotation	PF07141	NA	NA
UHGV-2086605_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2086605_25	PHROG	phrog_5902	NA	unknown function
UHGV-2086605_25	UniRef90	UniRef90_UPI001D015CB7	terminase	NA
UHGV-2086605_25	eggNOG-mapper	699218.HMPREF0889_0289	Terminase RNaseH-like domain	NA
UHGV-2086605_25	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2086605_25	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2086605_27	PHROG	phrog_332	head-tail adaptor	connector
UHGV-2086605_27	UniRef90	UniRef90_UPI001D01A9F3	portal protein	NA
UHGV-2086605_27	eggNOG-mapper	699218.HMPREF0889_0287	Bacteriophage head to tail connecting protein	NA
UHGV-2086605_27	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-2086605_27	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-2086605_28	PHROG	phrog_528	NA	unknown function
UHGV-2086605_28	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-2086605_29	PHROG	phrog_458	protease	other
UHGV-2086605_29	eggNOG-mapper	699218.HMPREF0889_0285	NA	NA
UHGV-2086605_30	PHROG	phrog_212	major head protein	head and packaging
UHGV-2086605_30	UniRef90	UniRef90_A0A0M3F638	NA	NA
UHGV-2086605_30	eggNOG-mapper	699218.HMPREF0889_0284	NA	NA
UHGV-2086605_30	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-2086605_30	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2086605_31	Structural annotation	PF21190	NA	NA
UHGV-2086605_32	Structural annotation	PF12949	NA	NA
UHGV-2086605_33	PHROG	phrog_394	tail protein	tail
UHGV-2086605_33	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-2086605_33	eggNOG-mapper	699218.HMPREF0889_0282	NA	NA
UHGV-2086605_34	PHROG	phrog_376	tail protein	tail
UHGV-2086605_34	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-2086605_34	eggNOG-mapper	699218.HMPREF0889_0281	NA	NA
UHGV-2086605_34	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-2086605_35	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-2086605_35	eggNOG-mapper	2754.EH55_01285	NA	NA
UHGV-2086605_35	Structural annotation	PF02474, MF_02210, NF007025, COG3981	NA	NA
UHGV-2086605_36	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-2086605_36	eggNOG-mapper	699218.HMPREF0889_0279	NA	NA
UHGV-2086605_36	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-2086605_37	UniRef90	UniRef90_UPI001D005619	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-2086605_37	eggNOG-mapper	699218.HMPREF0889_0278	lytic transglycosylase activity	NA
UHGV-2086605_37	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-2086605_37	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2086605_37	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-2086605_37	Structural annotation	NF011856	NA	NA
UHGV-2086605_38	PHROG	phrog_9880	NA	unknown function
UHGV-2086605_38	UniRef90	UniRef90_A0A239Z8B8	LPD3 domain-containing protein	NA
UHGV-2086605_38	eggNOG-mapper	699218.HMPREF0889_0277	NA	NA
UHGV-2086605_38	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-2086605_39	eggNOG-mapper	1401067.HMPREF0872_07835	NA	NA
UHGV-2086605_39	Structural annotation	PF03906	NA	NA
UHGV-2086605_40	PHROG	phrog_6921	tail fiber protein	tail
UHGV-2086605_40	UniRef90	UniRef90_A0A354WRB2	Collar domain-containing protein	NA
UHGV-2086605_40	eggNOG-mapper	556269.ACDQ01000006_gene1582	Phage Tail Collar Domain	NA
UHGV-2086605_40	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-2086605_40	COG	COG4675	Phage tail collar domain	NA
UHGV-2086605_41	UniRef90	UniRef90_A0A354WRB2	Collar domain-containing protein	NA
UHGV-2086605_41	eggNOG-mapper	556268.OFAG_01007	Phage Tail Collar Domain	NA
UHGV-2086605_41	COG	COG4675	Phage tail collar domain	NA
UHGV-2086605_41	Structural annotation	PF07484, COG4675	NA	NA
UHGV-2086605_44	PHROG	phrog_774	NA	unknown function
UHGV-2086605_44	Structural annotation	PF06657, MF_01506, TIGR03090	NA	NA
UHGV-2086605_46	PHROG	phrog_28789	NA	unknown function
UHGV-2086605_46	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-2086605_46	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-2086605_47	PHROG	phrog_918	NA	unknown function
UHGV-2086605_47	UniRef90	UniRef90_UPI0008DFA801	NA	NA
UHGV-2086605_47	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-2086605_47	Pfam	PF19791	NA	DUF6275
UHGV-2086605_47	Structural annotation	PF19791	NA	NA
UHGV-2086605_48	PHROG	phrog_872	NA	unknown function
UHGV-2086605_48	UniRef90	UniRef90_UPI0009BD6CEB	NA	NA
UHGV-2086605_48	eggNOG-mapper	1280692.AUJL01000027_gene2162	NA	NA
UHGV-2086605_48	Pfam	PF11195	NA	DUF2829
UHGV-2086605_48	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2086605_48	Structural annotation	PF11195, PF14083	NA	NA
UHGV-2086605_49	KOfam	K07273	acm; lysozyme	NA
UHGV-2086605_49	PHROG	phrog_291	endolysin	lysis
UHGV-2086605_49	UniRef90	UniRef90_UPI001D01FBFB	glycosyl hydrolase family 25	NA
UHGV-2086605_49	eggNOG-mapper	1122216.AUHW01000006_gene367	Glycosyl hydrolase family 25	NA
UHGV-2086605_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2086605_49	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2086605_49	Structural annotation	PF01183, NF008377, COG3757	NA	NA