UHGV-2087071

Genome information

Genome length 40,938 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-2087071
vOTU ID	vOTU-014060
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029472\|Ga0244197_100008\|provirus_18106_59043
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.9
Jumbo phage	No

Genome content
Genome length	40,938 bps
GC content	44.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.09%
Average CDS length	621.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2087071_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2087071_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2087071_1	UniRef90	UniRef90_R5Z7N2	Resolvase domain protein	NA
UHGV-2087071_1	eggNOG-mapper	1235800.C819_00524	Resolvase, N terminal domain	NA
UHGV-2087071_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2087071_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2087071_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2087071_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2087071_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2087071_2	PHROG	phrog_1847	NA	unknown function
UHGV-2087071_2	UniRef90	UniRef90_UPI00040ED02D	NA	NA
UHGV-2087071_2	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-2087071_2	Pfam	PF13250	NA	DUF4041
UHGV-2087071_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2087071_2	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-2087071_2	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-2087071_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2087071_5	UniRef90	UniRef90_A0A3R6SM67	XRE family transcriptional regulator	NA
UHGV-2087071_5	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-2087071_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2087071_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2087071_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2087071_9	PHROG	phrog_28292	NA	unknown function
UHGV-2087071_9	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-2087071_9	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-2087071_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2087071_13	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-2087071_13	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2087071_14	UniRef90	UniRef90_A0A373P426	RNase H type-1 domain-containing protein	NA
UHGV-2087071_14	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2087071_14	COG	COG0328	Ribonuclease HI	NA
UHGV-2087071_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2087071_15	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2087071_16	PHROG	phrog_8470	NA	unknown function
UHGV-2087071_16	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-2087071_16	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-2087071_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2087071_16	Structural annotation	PF14284	NA	NA
UHGV-2087071_17	PHROG	phrog_15077	NA	unknown function
UHGV-2087071_17	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-2087071_17	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-2087071_17	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2087071_18	UniRef90	UniRef90_A0A373P4I4	Winged helix-turn-helix transcriptional regulator	NA
UHGV-2087071_18	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-2087071_18	Structural annotation	PF01726, MF_00732, NF041852, COG0640	NA	NA
UHGV-2087071_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2087071_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2087071_19	UniRef90	UniRef90_A0A373P5V7	Single-stranded DNA-binding protein	NA
UHGV-2087071_19	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-2087071_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2087071_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2087071_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2087071_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2087071_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2087071_20	PHROG	phrog_7566	NA	unknown function
UHGV-2087071_20	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-2087071_21	Structural annotation	PF02796, NF040595	NA	NA
UHGV-2087071_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2087071_24	UniRef90	UniRef90_A0A174B4K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2087071_24	eggNOG-mapper	665950.HMPREF1025_02539	sigma factor activity	NA
UHGV-2087071_24	Pfam	PF07374	NA	DUF1492
UHGV-2087071_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2087071_24	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2087071_26	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2087071_26	UniRef90	UniRef90_UPI001C0F3787	helix-turn-helix domain-containing protein	NA
UHGV-2087071_26	eggNOG-mapper	1536772.R70723_06635	transposase activity	NA
UHGV-2087071_26	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-2087071_26	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2087071_26	Structural annotation	PF07141	NA	NA
UHGV-2087071_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2087071_27	UniRef90	UniRef90_A0A174B1X3	Phage terminase, large subunit, PBSX family	NA
UHGV-2087071_27	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-2087071_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2087071_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2087071_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-2087071_28	UniRef90	UniRef90_A0A174B3T3	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2087071_28	eggNOG-mapper	394503.Ccel_3049	NA	NA
UHGV-2087071_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2087071_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2087071_29	PHROG	phrog_25639	NA	unknown function
UHGV-2087071_29	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-2087071_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2087071_30	UniRef90	UniRef90_A0A416Q253	Minor capsid protein	NA
UHGV-2087071_30	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2087071_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2087071_30	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2087071_30	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2087071_30	Structural annotation	PF06152	NA	NA
UHGV-2087071_32	PHROG	phrog_3675	NA	unknown function
UHGV-2087071_32	UniRef90	UniRef90_A0A416Q246	Dihydrolipoyl dehydrogenase	NA
UHGV-2087071_32	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-2087071_32	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2087071_32	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-2087071_34	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2087071_34	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-2087071_34	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2087071_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2087071_36	UniRef90	UniRef90_A0A174B6A1	Phage minor structural protein GP20	NA
UHGV-2087071_36	eggNOG-mapper	1294142.CINTURNW_1028	Phage minor structural protein GP20	NA
UHGV-2087071_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2087071_36	Structural annotation	PF06810	NA	NA
UHGV-2087071_37	PHROG	phrog_212	major head protein	head and packaging
UHGV-2087071_37	UniRef90	UniRef90_A0A416Q289	Phage capsid protein	NA
UHGV-2087071_37	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-2087071_37	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2087071_38	PHROG	phrog_15682	NA	unknown function
UHGV-2087071_38	eggNOG-mapper	1122918.KB907248_gene4497	NA	NA
UHGV-2087071_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2087071_39	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-2087071_40	PHROG	phrog_8710	NA	unknown function
UHGV-2087071_40	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-2087071_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2087071_41	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2087071_42	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2087071_42	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-2087071_42	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-2087071_42	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2087071_42	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2087071_43	PHROG	phrog_820	major tail protein	tail
UHGV-2087071_43	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-2087071_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2087071_44	PHROG	phrog_8300	NA	unknown function
UHGV-2087071_44	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-2087071_44	Structural annotation	PF06854	NA	NA
UHGV-2087071_45	PHROG	phrog_8355	NA	unknown function
UHGV-2087071_45	UniRef90	UniRef90_UPI001C10E2B7	Gp15 family bacteriophage protein	NA
UHGV-2087071_45	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-2087071_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2087071_46	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-2087071_46	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2087071_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2087071_46	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2087071_47	PHROG	phrog_1194	NA	unknown function
UHGV-2087071_47	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2087071_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2087071_48	PHROG	phrog_6616	tail protein	tail
UHGV-2087071_48	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-2087071_48	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-2087071_48	COG	COG4926	Phage-related protein	NA
UHGV-2087071_48	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2087071_49	PHROG	phrog_11037	NA	unknown function
UHGV-2087071_49	UniRef90	UniRef90_A0A174B682	NlpC/P60 family	NA
UHGV-2087071_49	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-2087071_49	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2087071_49	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2087071_49	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2087071_49	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-2087071_50	PHROG	phrog_24267	NA	unknown function
UHGV-2087071_50	UniRef90	UniRef90_A0A174B5G0	Phage-related holin (Lysis protein)	NA
UHGV-2087071_50	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2087071_50	COG	COG4675	Phage tail collar domain	NA
UHGV-2087071_51	PHROG	phrog_19695	NA	unknown function
UHGV-2087071_51	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-2087071_51	Structural annotation	PF19714	NA	NA
UHGV-2087071_52	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-2087071_52	PHROG	phrog_7158	NA	unknown function
UHGV-2087071_52	UniRef90	UniRef90_A0A416ZS15	Metallophos domain-containing protein	NA
UHGV-2087071_52	eggNOG-mapper	657309.BXY_05130	Calcineurin-like phosphoesterase	NA
UHGV-2087071_52	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-2087071_52	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-2087071_53	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2087071_53	PHROG	phrog_1	integrase	integration and excision
UHGV-2087071_53	UniRef90	UniRef90_A0A416ZKZ8	Integrase	NA
UHGV-2087071_53	eggNOG-mapper	742735.HMPREF9467_00725	Belongs to the 'phage' integrase family	NA
UHGV-2087071_53	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2087071_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2087071_53	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2087071_53	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2087071_54	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2087071_54	PHROG	phrog_3088	amidase	lysis
UHGV-2087071_54	UniRef90	UniRef90_UPI001EDEB2AA	peptidoglycan recognition protein family protein	NA
UHGV-2087071_54	eggNOG-mapper	742740.HMPREF9474_01195	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2087071_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2087071_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2087071_55	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2087071_55	PHROG	phrog_1	integrase	integration and excision
UHGV-2087071_55	UniRef90	UniRef90_A0A416ZRY9	Integrase	NA
UHGV-2087071_55	eggNOG-mapper	33035.JPJF01000058_gene3673	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2087071_55	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2087071_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2087071_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2087071_55	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2087071_56	PHROG	phrog_20441	NA	unknown function
UHGV-2087071_56	UniRef90	UniRef90_UPI0013BD9B76	NA	NA
UHGV-2087071_57	PHROG	phrog_1863	NA	unknown function
UHGV-2087071_57	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-2087071_57	eggNOG-mapper	556261.HMPREF0240_01265	NA	NA
UHGV-2087071_58	PHROG	phrog_1129	holin	lysis
UHGV-2087071_58	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-2087071_58	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-2087071_58	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2087071_58	Structural annotation	PF16079	NA	NA
UHGV-2087071_59	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2087071_59	PHROG	phrog_3088	amidase	lysis
UHGV-2087071_59	UniRef90	UniRef90_UPI001C025321	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2087071_59	eggNOG-mapper	478749.BRYFOR_07564	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2087071_59	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2087071_59	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2087071_59	COG	COG3087	Cell division protein FtsN	NA
UHGV-2087071_59	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA