UHGV-2087633

Genome information

Genome length 26,308 bps

CDS count 50

Completeness 66.84% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-2087633
vOTU ID	vOTU-039936
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029470\|Ga0244172_100215\|provirus_59675_85982
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.29
Jumbo phage	No

Genome content
Genome length	26,308 bps
GC content	41.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	86.14%
Average CDS length	456.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2087633_1	UniRef90	UniRef90_A0A174VJJ8	Cell wall binding repeat-containing protein /mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA
UHGV-2087633_1	eggNOG-mapper	742733.HMPREF9469_00413	NA	NA
UHGV-2087633_2	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-2087633_2	PHROG	phrog_7	endolysin	lysis
UHGV-2087633_2	UniRef90	UniRef90_R5IS13	Lysozyme	NA
UHGV-2087633_2	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-2087633_2	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-2087633_2	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-2087633_2	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2087633_2	HAMAP	MF_04110	Endolysin	NA
UHGV-2087633_2	Structural annotation	PF19127, MF_04110, TIGR04035, COG3772	NA	NA
UHGV-2087633_3	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-2087633_3	UniRef90	UniRef90_A0A396KF73	ORF6N domain-containing protein	NA
UHGV-2087633_3	eggNOG-mapper	476272.RUMHYD_02879	ORF6N domain	NA
UHGV-2087633_3	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2087633_3	Structural annotation	PF10543, TIGR02681, COG3561	NA	NA
UHGV-2087633_4	UniRef90	UniRef90_R9JJZ1	RHH_1 domain-containing protein	NA
UHGV-2087633_4	eggNOG-mapper	397287.C807_01320	NA	NA
UHGV-2087633_4	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2087633_4	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-2087633_5	PHROG	phrog_1129	holin	lysis
UHGV-2087633_5	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-2087633_5	eggNOG-mapper	1321782.HMPREF1986_00360	NA	NA
UHGV-2087633_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2087633_5	Structural annotation	PF06946	NA	NA
UHGV-2087633_6	PHROG	phrog_4105	NA	unknown function
UHGV-2087633_6	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-2087633_7	PHROG	phrog_1382	NA	unknown function
UHGV-2087633_7	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-2087633_7	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2087633_8	PHROG	phrog_1382	NA	unknown function
UHGV-2087633_8	UniRef90	UniRef90_A0A3E2UAD4	ASCH domain-containing protein	NA
UHGV-2087633_8	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2087633_9	PHROG	phrog_12931	NA	unknown function
UHGV-2087633_9	eggNOG-mapper	1298920.KI911353_gene2672	NA	NA
UHGV-2087633_10	PHROG	phrog_25888	NA	unknown function
UHGV-2087633_10	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2087633_10	Structural annotation	PF10651	NA	NA
UHGV-2087633_11	PHROG	phrog_15239	NA	unknown function
UHGV-2087633_12	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2087633_12	UniRef90	UniRef90_A0A396KH29	N4-gp56 family major capsid protein	NA
UHGV-2087633_12	eggNOG-mapper	1203606.HMPREF1526_02746	NA	NA
UHGV-2087633_12	Pfam	PF13252	NA	DUF4043
UHGV-2087633_12	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2087633_12	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2087633_13	PHROG	phrog_13908	NA	unknown function
UHGV-2087633_13	eggNOG-mapper	1321782.HMPREF1986_00346	NA	NA
UHGV-2087633_14	KOfam	K07584	NA	NA
UHGV-2087633_14	PHROG	phrog_4478	peptidase	other
UHGV-2087633_14	UniRef90	UniRef90_A0A3R6XUE7	Ribosomal-processing cysteine protease Prp	NA
UHGV-2087633_14	eggNOG-mapper	273068.TTE0914	Cysteine protease Prp	NA
UHGV-2087633_14	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2087633_14	COG	COG2868	NA	NA
UHGV-2087633_14	Structural annotation	PF04327, NF011132, COG2868	NA	NA
UHGV-2087633_15	PHROG	phrog_156	portal protein	head and packaging
UHGV-2087633_15	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-2087633_15	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2087633_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2087633_16	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2087633_16	UniRef90	UniRef90_A0A3R6X3R7	Terminase-like family protein	NA
UHGV-2087633_16	eggNOG-mapper	748224.HMPREF9436_02548	Terminase-like family	NA
UHGV-2087633_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2087633_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-2087633_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2087633_17	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2087633_17	UniRef90	UniRef90_A0A417U663	Helix-turn-helix domain-containing protein	NA
UHGV-2087633_17	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-2087633_17	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2087633_17	Structural annotation	PF07141	NA	NA
UHGV-2087633_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2087633_20	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-2087633_20	eggNOG-mapper	411468.CLOSCI_00558	NA	NA
UHGV-2087633_20	Structural annotation	PF21578	NA	NA
UHGV-2087633_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2087633_21	PHROG	phrog_1	integrase	integration and excision
UHGV-2087633_21	UniRef90	UniRef90_A0A2S6HJ77	Site-specific recombinase XerD	NA
UHGV-2087633_21	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-2087633_21	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2087633_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2087633_21	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2087633_21	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2087633_24	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-2087633_24	UniRef90	UniRef90_A0A1B9VJV9	HicB family protein	NA
UHGV-2087633_24	eggNOG-mapper	237609.PSAKL28_39050	HicB family	NA
UHGV-2087633_24	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-2087633_24	Structural annotation	PF21748, COG4226	NA	NA
UHGV-2087633_25	UniRef90	UniRef90_UPI0008BFBBEB	ribbon-helix-helix protein, CopG family	NA
UHGV-2087633_25	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-2087633_29	PHROG	phrog_799	DNA methyltransferase	other
UHGV-2087633_29	UniRef90	UniRef90_UPI00164B239B	class I SAM-dependent methyltransferase	NA
UHGV-2087633_29	eggNOG-mapper	1434319.W5RVC2_9CAUD	methyltransferase activity	NA
UHGV-2087633_29	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-2087633_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2087633_30	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2087633_30	UniRef90	UniRef90_A0A415MF98	Methyltransferase	NA
UHGV-2087633_30	eggNOG-mapper	1235802.C823_04698	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2087633_30	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-2087633_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2087633_30	COG	COG0863	DNA modification methylase	NA
UHGV-2087633_30	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2087633_33	PHROG	phrog_419	NA	unknown function
UHGV-2087633_33	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-2087633_33	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-2087633_33	Structural annotation	PF14083	NA	NA
UHGV-2087633_36	PHROG	phrog_15198	NA	unknown function
UHGV-2087633_36	UniRef90	UniRef90_A0A3R6QEJ7	NA	NA
UHGV-2087633_36	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-2087633_36	Pfam	PF04448	NA	DUF551
UHGV-2087633_36	Structural annotation	NF041588	NA	NA
UHGV-2087633_39	PHROG	phrog_17690	NA	unknown function
UHGV-2087633_39	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-2087633_41	PHROG	phrog_7566	NA	unknown function
UHGV-2087633_41	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-2087633_41	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-2087633_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2087633_45	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2087633_45	UniRef90	UniRef90_A0A417U654	XRE family transcriptional regulator	NA
UHGV-2087633_45	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-2087633_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2087633_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2087633_48	eggNOG-mapper	756499.Desde_3141	Bacterial Ig-like domain 2	NA
UHGV-2087633_48	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-2087633_48	COG	COG5492	NA	NA