UHGV-2087943

Genome information

Genome length 33,369 bps

CDS count 49

Completeness 95.47% (high-quality)

geNomad score 0.9624

Prediction confidence Confident

Genome information
Genome ID	UHGV-2087943
vOTU ID	vOTU-007484
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029482\|Ga0244120_100087\|provirus_9117_47422
BioSample	SAMEA3708525
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9624
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.05
Jumbo phage	No

Genome content
Genome length	33,369 bps
GC content	37.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	88.01%
Average CDS length	600.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2087943_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2087943_1	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2087943_1	UniRef90	UniRef90_A0A3R6US75	XRE family transcriptional regulator	NA
UHGV-2087943_1	eggNOG-mapper	1321782.HMPREF1986_02243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2087943_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2087943_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2087943_1	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2087943_3	eggNOG-mapper	1121115.AXVN01000047_gene1270	NA	NA
UHGV-2087943_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2087943_4	UniRef90	UniRef90_A0A416P8B5	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2087943_4	eggNOG-mapper	472759.Nhal_3024	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2087943_4	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2087943_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2087943_4	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2087943_5	PHROG	phrog_37898	NA	unknown function
UHGV-2087943_5	UniRef90	UniRef90_UPI001C12223A	NA	NA
UHGV-2087943_5	eggNOG-mapper	633697.EubceDRAFT1_0093	NA	NA
UHGV-2087943_5	Pfam	PF10387	NA	DUF2442
UHGV-2087943_6	PHROG	phrog_14333	NA	unknown function
UHGV-2087943_6	UniRef90	UniRef90_A0A496NMY7	NA	NA
UHGV-2087943_6	eggNOG-mapper	596323.HMPREF0554_0754	NA	NA
UHGV-2087943_6	Pfam	PF13711	NA	DUF4160
UHGV-2087943_6	Structural annotation	PF13711	NA	NA
UHGV-2087943_7	PHROG	phrog_87	metallo-protease	other
UHGV-2087943_7	UniRef90	UniRef90_R6MT42	Pathogenicity island protein	NA
UHGV-2087943_7	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-2087943_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2087943_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2087943_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2087943_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2087943_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2087943_8	UniRef90	UniRef90_R6LNJ7	Helix-turn-helix protein	NA
UHGV-2087943_8	eggNOG-mapper	1123511.KB905868_gene209	Helix-turn-helix XRE-family like proteins	NA
UHGV-2087943_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2087943_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2087943_9	UniRef90	UniRef90_R6VHA9	Helix-turn-helix domain protein	NA
UHGV-2087943_9	eggNOG-mapper	642492.Clole_2800	NA	NA
UHGV-2087943_9	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2087943_10	eggNOG-mapper	411468.CLOSCI_01459	NA	NA
UHGV-2087943_11	PHROG	phrog_750	NA	unknown function
UHGV-2087943_11	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-2087943_11	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2087943_15	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2087943_15	UniRef90	UniRef90_A0A1L5F8R0	Replication terminator protein	NA
UHGV-2087943_15	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-2087943_16	PHROG	phrog_1029	NA	unknown function
UHGV-2087943_16	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-2087943_16	eggNOG-mapper	1232453.BAIF02000057_gene1140	NA	NA
UHGV-2087943_16	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2087943_17	PHROG	phrog_11237	NA	unknown function
UHGV-2087943_17	eggNOG-mapper	742740.HMPREF9474_02326	NA	NA
UHGV-2087943_17	Structural annotation	TIGR01636	NA	NA
UHGV-2087943_18	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-2087943_18	UniRef90	UniRef90_R5S301	NA	NA
UHGV-2087943_18	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-2087943_18	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2087943_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2087943_18	Structural annotation	PF14297	NA	NA
UHGV-2087943_24	UniRef90	UniRef90_A0A417IXP4	Chemotaxis protein	NA
UHGV-2087943_24	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-2087943_24	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-2087943_25	UniRef90	UniRef90_R5RL55	HicB-like domain-containing protein	NA
UHGV-2087943_25	eggNOG-mapper	537007.BLAHAN_05445	NA	NA
UHGV-2087943_25	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2087943_25	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2087943_26	UniRef90	UniRef90_A0A414A6E1	Protein phosphatase	NA
UHGV-2087943_26	eggNOG-mapper	411902.CLOBOL_03859	NA	NA
UHGV-2087943_26	AcrCatalog	cluster_13845	NA	NA
UHGV-2087943_27	UniRef90	UniRef90_A0A417IXP4	Chemotaxis protein	NA
UHGV-2087943_27	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-2087943_27	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-2087943_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2087943_28	PHROG	phrog_216	integrase	integration and excision
UHGV-2087943_28	UniRef90	UniRef90_R5S311	Integrase	NA
UHGV-2087943_28	eggNOG-mapper	1235793.C809_02656	PFAM Phage integrase family	NA
UHGV-2087943_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2087943_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2087943_28	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-2087943_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2087943_29	UniRef90	UniRef90_R6M5E4	Prophage LambdaBa04 GP54	NA
UHGV-2087943_29	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-2087943_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2087943_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2087943_30	PHROG	phrog_1066	NA	unknown function
UHGV-2087943_30	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-2087943_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2087943_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2087943_31	UniRef90	UniRef90_R6M9L9	Terminase	NA
UHGV-2087943_31	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-2087943_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2087943_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2087943_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2087943_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2087943_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-2087943_32	UniRef90	UniRef90_R6MZ38	HK97 family phage portal protein	NA
UHGV-2087943_32	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-2087943_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2087943_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2087943_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2087943_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2087943_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2087943_33	UniRef90	UniRef90_R6LUH3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2087943_33	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-2087943_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2087943_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2087943_33	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2087943_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-2087943_34	UniRef90	UniRef90_R6M5E9	Putative prophage LambdaBa04 major capsid protein	NA
UHGV-2087943_34	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2087943_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2087943_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2087943_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2087943_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2087943_36	PHROG	phrog_5223	neck protein	connector
UHGV-2087943_36	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-2087943_36	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-2087943_36	Structural annotation	TIGR01560	NA	NA
UHGV-2087943_37	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2087943_37	UniRef90	UniRef90_R5RJH6	Phage head-tail adaptor	NA
UHGV-2087943_37	eggNOG-mapper	1444310.JANV01000004_gene2678	head-tail adaptor	NA
UHGV-2087943_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2087943_37	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2087943_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2087943_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2087943_38	UniRef90	UniRef90_R5S8G2	HK97 gp10 family phage protein	NA
UHGV-2087943_38	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-2087943_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2087943_38	Structural annotation	TIGR01725	NA	NA
UHGV-2087943_39	UniRef90	UniRef90_A0A7G9G8N8	Phage tail protein	NA
UHGV-2087943_39	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-2087943_39	COG	COG5492	NA	NA
UHGV-2087943_39	Structural annotation	PF05657	NA	NA
UHGV-2087943_40	PHROG	phrog_88	major tail protein	tail
UHGV-2087943_40	UniRef90	UniRef90_R6MSW5	Putative major tail protein	NA
UHGV-2087943_40	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-2087943_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2087943_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2087943_42	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-2087943_42	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2087943_42	UniRef90	UniRef90_R5RJI7	Phage tail tape measure protein TP901 family	NA
UHGV-2087943_42	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-2087943_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2087943_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2087943_42	COG	COG5283	Phage-related tail protein	NA
UHGV-2087943_42	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280, COG3853	NA	NA
UHGV-2087943_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2087943_43	eggNOG-mapper	1123298.KB904077_gene469	phage tail	NA
UHGV-2087943_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-2087943_43	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-2087943_44	PHROG	phrog_3558	tail protein	tail
UHGV-2087943_44	UniRef90	UniRef90_R5RRY2	Peptidase S74 domain-containing protein	NA
UHGV-2087943_44	eggNOG-mapper	1121866.AUGK01000006_gene890	Phage minor structural protein	NA
UHGV-2087943_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2087943_44	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2087943_44	COG	COG4926	Phage-related protein	NA
UHGV-2087943_48	PHROG	phrog_1863	NA	unknown function
UHGV-2087943_48	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-2087943_48	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2087943_49	PHROG	phrog_443	holin	lysis
UHGV-2087943_49	UniRef90	UniRef90_UPI001C10520B	holin	NA
UHGV-2087943_49	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-2087943_49	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2087943_49	Structural annotation	PF16945	NA	NA