UHGV-2088128

Genome information

Genome length 38,863 bps

CDS count 44

Completeness 99.68% (high-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-2088128
vOTU ID	vOTU-014406
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029432\|Ga0243805_100213\|provirus_9570_48432
BioSample	SAMN05971512
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.68% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.08
Jumbo phage	No

Genome content
Genome length	38,863 bps
GC content	41.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.01%
Average CDS length	823.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2088128_1	UniRef90	UniRef90_A0A660N8U2	23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD (Fragment)	NA
UHGV-2088128_1	eggNOG-mapper	411469.EUBHAL_02103	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family	NA
UHGV-2088128_1	COG	COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	NA
UHGV-2088128_2	KOfam	K07273	acm; lysozyme	NA
UHGV-2088128_2	PHROG	phrog_6745	endolysin	lysis
UHGV-2088128_2	UniRef90	UniRef90_A0A1C5L8B5	Lysozyme M1	NA
UHGV-2088128_2	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-2088128_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2088128_2	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2088128_2	Structural annotation	PF01183, PF18342, PF14603, NF040678, TIGR04303, COG3757, COG3807	NA	NA
UHGV-2088128_3	PHROG	phrog_1129	holin	lysis
UHGV-2088128_3	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-2088128_3	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2088128_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2088128_3	Structural annotation	PF16079	NA	NA
UHGV-2088128_4	PHROG	phrog_4105	NA	unknown function
UHGV-2088128_4	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2088128_5	UniRef90	UniRef90_A0A417CS53	Peptidase S74 domain-containing protein	NA
UHGV-2088128_5	eggNOG-mapper	411459.RUMOBE_00913	NA	NA
UHGV-2088128_6	UniRef90	UniRef90_A0A564VXL8	Bacterial Ig-like domain (Group 2)	NA
UHGV-2088128_6	Structural annotation	PF01301, PF03944, MF_00279, NF040743, COG3622	NA	NA
UHGV-2088128_7	PHROG	phrog_18110	NA	unknown function
UHGV-2088128_7	UniRef90	UniRef90_A5ZPK6	Phage minor structural protein, N-terminal domain protein	NA
UHGV-2088128_7	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-2088128_7	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-2088128_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2088128_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2088128_7	COG	COG4926	Phage-related protein	NA
UHGV-2088128_8	PHROG	phrog_1401	NA	unknown function
UHGV-2088128_8	eggNOG-mapper	272562.CA_C1880	NA	NA
UHGV-2088128_8	Structural annotation	PF07761	NA	NA
UHGV-2088128_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2088128_9	UniRef90	UniRef90_A5ZPK8	Putative phage tail component domain protein	NA
UHGV-2088128_9	eggNOG-mapper	411459.RUMOBE_00925	phage tail	NA
UHGV-2088128_9	Pfam	PF20753	Phage tail C-terminal domain	DUF6558_C
UHGV-2088128_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-2088128_9	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-2088128_10	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-2088128_10	PHROG	phrog_5218	NA	unknown function
UHGV-2088128_10	UniRef90	UniRef90_A0A174CPF9	Phage-related minor tail protein	NA
UHGV-2088128_10	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-2088128_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2088128_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2088128_10	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-2088128_11	eggNOG-mapper	1235792.C808_03057	NA	NA
UHGV-2088128_12	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-2088128_12	Structural annotation	PF11836	NA	NA
UHGV-2088128_13	PHROG	phrog_88	major tail protein	tail
UHGV-2088128_13	UniRef90	UniRef90_A5ZPL3	Phage major tail protein, phi13 family	NA
UHGV-2088128_13	eggNOG-mapper	1123075.AUDP01000020_gene1518	phage major tail protein, phi13 family	NA
UHGV-2088128_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2088128_13	COG	COG5492	NA	NA
UHGV-2088128_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2088128_14	PHROG	phrog_78	tail terminator	connector
UHGV-2088128_14	eggNOG-mapper	1195236.CTER_5107	NA	NA
UHGV-2088128_14	Structural annotation	PF05657	NA	NA
UHGV-2088128_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2088128_15	UniRef90	UniRef90_UPI0013905FA6	HK97 gp10 family phage protein	NA
UHGV-2088128_15	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-2088128_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2088128_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2088128_15	Structural annotation	TIGR01725	NA	NA
UHGV-2088128_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2088128_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2088128_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2088128_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2088128_17	PHROG	phrog_5223	neck protein	connector
UHGV-2088128_17	UniRef90	UniRef90_H6LCB7	Putative prophage LambdaBa04 DNA packaging protein	NA
UHGV-2088128_17	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-2088128_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2088128_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-2088128_18	UniRef90	UniRef90_UPI001D065474	phage major capsid protein	NA
UHGV-2088128_18	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2088128_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2088128_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2088128_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2088128_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2088128_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2088128_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2088128_19	UniRef90	UniRef90_A0A4Q7PKT6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2088128_19	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-2088128_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2088128_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2088128_19	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-2088128_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-2088128_20	UniRef90	UniRef90_UPI001EE04D35	phage portal protein	NA
UHGV-2088128_20	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-2088128_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2088128_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2088128_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2088128_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2088128_21	UniRef90	UniRef90_A0A4V2F7T1	Phage terminase large subunit-like protein	NA
UHGV-2088128_21	eggNOG-mapper	318464.IO99_13765	Terminase	NA
UHGV-2088128_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2088128_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2088128_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2088128_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2088128_22	PHROG	phrog_1066	NA	unknown function
UHGV-2088128_22	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-2088128_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2088128_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2088128_23	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-2088128_23	eggNOG-mapper	1203606.HMPREF1526_00983	HNH endonuclease	NA
UHGV-2088128_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2088128_24	UniRef90	UniRef90_A0A416J0I8	Chemotaxis protein	NA
UHGV-2088128_24	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-2088128_24	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-2088128_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2088128_26	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-2088128_26	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-2088128_26	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2088128_27	PHROG	phrog_19011	NA	unknown function
UHGV-2088128_27	Structural annotation	PF18359, COG4466	NA	NA
UHGV-2088128_31	PHROG	phrog_15982	NA	unknown function
UHGV-2088128_31	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-2088128_31	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-2088128_31	Pfam	PF12961	NA	DUF3850
UHGV-2088128_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2088128_31	Structural annotation	PF12961, PF11300, MF_00771, NF002615, COG2411	NA	NA
UHGV-2088128_32	PHROG	phrog_8470	NA	unknown function
UHGV-2088128_32	UniRef90	UniRef90_UPI001D08730A	PcfJ domain-containing protein	NA
UHGV-2088128_32	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-2088128_32	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2088128_32	Structural annotation	PF14284	NA	NA
UHGV-2088128_33	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-2088128_34	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2088128_34	UniRef90	UniRef90_A0A415L5F5	NA	NA
UHGV-2088128_34	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-2088128_34	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2088128_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2088128_34	Structural annotation	PF14297	NA	NA
UHGV-2088128_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2088128_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2088128_35	UniRef90	UniRef90_UPI001F2D4613	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2088128_35	eggNOG-mapper	272563.CD630_29310	Endodeoxyribonuclease RusA	NA
UHGV-2088128_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2088128_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2088128_37	PHROG	phrog_6058	NA	unknown function
UHGV-2088128_37	UniRef90	UniRef90_A0A352BM25	XRE family transcriptional regulator	NA
UHGV-2088128_37	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-2088128_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2088128_37	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-2088128_39	UniRef90	UniRef90_UPI00189D0969	NA	NA
UHGV-2088128_39	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-2088128_39	Pfam	PF05339	NA	DUF739
UHGV-2088128_39	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2088128_40	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2088128_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2088128_40	UniRef90	UniRef90_UPI001D02CC6F	helix-turn-helix domain-containing protein	NA
UHGV-2088128_40	eggNOG-mapper	742723.HMPREF9477_00937	Helix-turn-helix XRE-family like proteins	NA
UHGV-2088128_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2088128_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2088128_40	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2088128_41	PHROG	phrog_87	metallo-protease	other
UHGV-2088128_41	UniRef90	UniRef90_A0A414EG59	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2088128_41	eggNOG-mapper	1121115.AXVN01000006_gene2176	NA	NA
UHGV-2088128_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2088128_41	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2088128_42	PHROG	phrog_1847	NA	unknown function
UHGV-2088128_42	UniRef90	UniRef90_UPI00156E489C	NA	NA
UHGV-2088128_42	eggNOG-mapper	445974.CLORAM_02968	T5orf172	NA
UHGV-2088128_42	Pfam	PF13250	NA	DUF4041
UHGV-2088128_42	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2088128_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2088128_42	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-2088128_43	PHROG	phrog_10059	NA	unknown function
UHGV-2088128_43	UniRef90	UniRef90_A0A417PG51	BIG2 domain-containing protein	NA
UHGV-2088128_43	eggNOG-mapper	1235790.C805_02386	domain, Protein	NA
UHGV-2088128_43	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2088128_43	COG	COG5492	NA	NA
UHGV-2088128_43	Structural annotation	PF21461	NA	NA
UHGV-2088128_44	KOfam	K14059	int; integrase	NA
UHGV-2088128_44	PHROG	phrog_1	integrase	integration and excision
UHGV-2088128_44	UniRef90	UniRef90_A0A564WTT7	Site-specific tyrosine recombinase XerC	NA
UHGV-2088128_44	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-2088128_44	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2088128_44	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2088128_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2088128_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2088128_44	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA