UHGV-2088309

Genome information

Genome length 38,457 bps

CDS count 61

Completeness 98.76% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-2088309
vOTU ID	vOTU-009932
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029516\|Ga0244799_100130\|provirus_65405_103861
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.04
Jumbo phage	No

Genome content
Genome length	38,457 bps
GC content	41.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.50%
Average CDS length	581.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2088309_1	PHROG	phrog_7854	endolysin	lysis
UHGV-2088309_1	UniRef90	UniRef90_A0A373SW30	MurNAc-LAA domain-containing protein	NA
UHGV-2088309_1	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2088309_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2088309_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-2088309_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2088309_1	Structural annotation	PF01520, TIGR02883, COG0860, COG5263	NA	NA
UHGV-2088309_2	PHROG	phrog_18218	NA	unknown function
UHGV-2088309_2	UniRef90	UniRef90_A0A373SUI3	Ribonuclease	NA
UHGV-2088309_2	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-2088309_2	Structural annotation	PF06946	NA	NA
UHGV-2088309_3	PHROG	phrog_1863	NA	unknown function
UHGV-2088309_3	eggNOG-mapper	78344.BIGA_0464	Glycosyl hydrolases family 25	NA
UHGV-2088309_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2088309_4	eggNOG-mapper	411461.DORFOR_00723	NA	NA
UHGV-2088309_5	eggNOG-mapper	1280698.AUJS01000007_gene1056	NA	NA
UHGV-2088309_5	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-2088309_6	PHROG	phrog_32322	NA	unknown function
UHGV-2088309_6	UniRef90	UniRef90_A0A373SWC9	Ig-like_bact domain-containing protein	NA
UHGV-2088309_6	eggNOG-mapper	411461.DORFOR_00725	NA	NA
UHGV-2088309_6	Pfam	PF13754	NA	Big_3_4
UHGV-2088309_7	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-2088309_7	PHROG	phrog_11157	NA	unknown function
UHGV-2088309_7	UniRef90	UniRef90_A0A373STT7	Big_13 domain-containing protein	NA
UHGV-2088309_7	eggNOG-mapper	411461.DORFOR_01182	NA	NA
UHGV-2088309_7	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-2088309_7	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-2088309_7	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-2088309_7	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-2088309_7	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-2088309_8	PHROG	phrog_1382	NA	unknown function
UHGV-2088309_8	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-2088309_9	PHROG	phrog_12931	NA	unknown function
UHGV-2088309_9	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-2088309_10	PHROG	phrog_9994	NA	unknown function
UHGV-2088309_10	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-2088309_10	eggNOG-mapper	742765.HMPREF9457_03373	NA	NA
UHGV-2088309_10	Structural annotation	PF20747	NA	NA
UHGV-2088309_11	PHROG	phrog_538	minor tail protein	tail
UHGV-2088309_11	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2088309_11	eggNOG-mapper	411460.RUMTOR_02096	NA	NA
UHGV-2088309_11	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2088309_11	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2088309_12	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-2088309_12	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-2088309_12	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2088309_13	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2088309_13	UniRef90	UniRef90_A0A173TTL9	Phage-related protein	NA
UHGV-2088309_13	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-2088309_13	COG	COG1511	NA	NA
UHGV-2088309_13	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2088309_14	PHROG	phrog_706	NA	unknown function
UHGV-2088309_14	UniRef90	UniRef90_B0G3B6	Bacteriophage Gp15 protein	NA
UHGV-2088309_14	eggNOG-mapper	411461.DORFOR_00737	COG NOG24969 non supervised orthologous group	NA
UHGV-2088309_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2088309_14	Structural annotation	PF06854	NA	NA
UHGV-2088309_15	PHROG	phrog_4450	NA	unknown function
UHGV-2088309_15	eggNOG-mapper	411462.DORLON_00780	NA	NA
UHGV-2088309_15	Pfam	PF20378	NA	DUF6673
UHGV-2088309_15	Structural annotation	PF20378	NA	NA
UHGV-2088309_16	PHROG	phrog_3099	NA	unknown function
UHGV-2088309_16	eggNOG-mapper	742765.HMPREF9457_02132	NA	NA
UHGV-2088309_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2088309_17	PHROG	phrog_3266	tail completion	connector
UHGV-2088309_17	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-2088309_17	Structural annotation	PF12691	NA	NA
UHGV-2088309_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2088309_18	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-2088309_18	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-2088309_18	Structural annotation	PF11114	NA	NA
UHGV-2088309_19	PHROG	phrog_3366	NA	unknown function
UHGV-2088309_19	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-2088309_19	Pfam	PF20536	NA	DUF6751
UHGV-2088309_19	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2088309_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2088309_20	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-2088309_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-2088309_21	UniRef90	UniRef90_A0A173TT07	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2088309_21	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-2088309_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2088309_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2088309_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2088309_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2088309_22	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2088309_22	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-2088309_22	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-2088309_23	KOfam	K07584	NA	NA
UHGV-2088309_23	PHROG	phrog_4478	peptidase	other
UHGV-2088309_23	UniRef90	UniRef90_UPI001D015AF1	ribosomal-processing cysteine protease Prp	NA
UHGV-2088309_23	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-2088309_23	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2088309_23	COG	COG2868	NA	NA
UHGV-2088309_23	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2088309_25	UniRef90	UniRef90_R6ZIV7	SPP1 gp7 family Head morphogeneis protein	NA
UHGV-2088309_25	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-2088309_25	COG	COG2369	NA	NA
UHGV-2088309_26	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-2088309_26	UniRef90	UniRef90_UPI00164A110D	ORF6N domain-containing protein	NA
UHGV-2088309_26	eggNOG-mapper	476272.RUMHYD_02879	ORF6N domain	NA
UHGV-2088309_26	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2088309_26	Structural annotation	PF10543, PF13058, TIGR02681, COG3646, COG2856	NA	NA
UHGV-2088309_27	UniRef90	UniRef90_A0A3E5GSP2	CopG family transcriptional regulator	NA
UHGV-2088309_27	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-2088309_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2088309_28	UniRef90	UniRef90_A0A1Q6J9C4	Minor capsid protein	NA
UHGV-2088309_28	eggNOG-mapper	411462.DORLON_00794	NA	NA
UHGV-2088309_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2088309_28	COG	COG2369	NA	NA
UHGV-2088309_28	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-2088309_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-2088309_29	UniRef90	UniRef90_A0A173TXV5	Phage portal protein, putative, A118 family	NA
UHGV-2088309_29	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-2088309_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2088309_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2088309_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2088309_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2088309_30	UniRef90	UniRef90_A0A373SU52	PBSX family phage terminase large subunit	NA
UHGV-2088309_30	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-2088309_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2088309_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2088309_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2088309_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2088309_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2088309_31	PHROG	phrog_2412	NA	unknown function
UHGV-2088309_31	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-2088309_31	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-2088309_32	Structural annotation	PF14524, NF041178	NA	NA
UHGV-2088309_33	eggNOG-mapper	1235799.C818_04214	NA	NA
UHGV-2088309_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2088309_34	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-2088309_34	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-2088309_34	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2088309_36	PHROG	phrog_25488	NA	unknown function
UHGV-2088309_37	Structural annotation	PF09889, MF_00649, COG4068	NA	NA
UHGV-2088309_38	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2088309_38	UniRef90	UniRef90_UPI0018AAF628	NA	NA
UHGV-2088309_38	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-2088309_38	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2088309_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2088309_38	Structural annotation	PF14297	NA	NA
UHGV-2088309_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2088309_39	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2088309_39	UniRef90	UniRef90_UPI001D0408BC	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2088309_39	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-2088309_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2088309_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2088309_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2088309_40	PHROG	phrog_1029	NA	unknown function
UHGV-2088309_40	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-2088309_40	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2088309_41	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2088309_41	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-2088309_42	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2088309_42	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2088309_42	UniRef90	UniRef90_UPI0018AC627C	recombinase RecT	NA
UHGV-2088309_42	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-2088309_42	Pfam	PF03837	RecT family	RecT
UHGV-2088309_42	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2088309_42	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2088309_42	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2088309_43	PHROG	phrog_674	NA	unknown function
UHGV-2088309_43	UniRef90	UniRef90_UPI0018ABB762	NA	NA
UHGV-2088309_43	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-2088309_43	Pfam	PF07083	NA	DUF1351
UHGV-2088309_43	Structural annotation	PF07083	NA	NA
UHGV-2088309_44	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2088309_44	UniRef90	UniRef90_UPI001D0490EC	YqaJ viral recombinase family protein	NA
UHGV-2088309_44	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-2088309_44	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2088309_44	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2088309_44	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2088309_44	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2088309_47	UniRef90	UniRef90_A0A1Q6J9H1	HTH cro/C1-type domain-containing protein	NA
UHGV-2088309_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2088309_47	Structural annotation	PF21291, MF_00535, NF007257, COG3655	NA	NA
UHGV-2088309_48	Structural annotation	PF20037, COG3212	NA	NA
UHGV-2088309_50	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2088309_50	UniRef90	UniRef90_UPI001E0FF2DE	ORF6C domain-containing protein	NA
UHGV-2088309_50	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-2088309_50	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2088309_50	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2088309_50	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2088309_50	Structural annotation	PF10552, PF10543, TIGR02681, COG3943	NA	NA
UHGV-2088309_51	UniRef90	UniRef90_A0A6N9LK73	XRE family transcriptional regulator	NA
UHGV-2088309_51	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-2088309_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2088309_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2088309_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2088309_52	UniRef90	UniRef90_A0A1Q6J9F6	HTH cro/C1-type domain-containing protein	NA
UHGV-2088309_52	eggNOG-mapper	1262449.CP6013_3167	Helix-turn-helix domain protein	NA
UHGV-2088309_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2088309_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2088309_52	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2088309_53	PHROG	phrog_87	metallo-protease	other
UHGV-2088309_53	UniRef90	UniRef90_A0A564SD80	Peptidase_M78 domain-containing protein	NA
UHGV-2088309_53	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-2088309_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2088309_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2088309_53	Structural annotation	PF06114, COG3800	NA	NA
UHGV-2088309_54	PHROG	phrog_4431	NA	unknown function
UHGV-2088309_54	UniRef90	UniRef90_UPI001CD27D14	NA	NA
UHGV-2088309_54	eggNOG-mapper	1158602.I590_00688	Short C-terminal domain	NA
UHGV-2088309_55	KOfam	K14059	int; integrase	NA
UHGV-2088309_55	PHROG	phrog_1	integrase	integration and excision
UHGV-2088309_55	UniRef90	UniRef90_A0A373SU30	Site-specific integrase	NA
UHGV-2088309_55	eggNOG-mapper	610130.Closa_1360	Belongs to the 'phage' integrase family	NA
UHGV-2088309_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2088309_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2088309_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2088309_55	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2088309_56	UniRef90	UniRef90_A0A416BF57	NA	NA
UHGV-2088309_56	eggNOG-mapper	411461.DORFOR_00520	NA	NA
UHGV-2088309_56	Pfam	PF12650	NA	DUF3784
UHGV-2088309_57	eggNOG-mapper	471875.RUMLAC_00970	NA	NA
UHGV-2088309_58	eggNOG-mapper	471875.RUMLAC_00969	NA	NA
UHGV-2088309_59	eggNOG-mapper	471875.RUMLAC_00968	NA	NA
UHGV-2088309_60	eggNOG-mapper	518637.EUBIFOR_00314	NA	NA
UHGV-2088309_61	Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	Exo_endo_phos