UHGV-2088902

Genome information

Genome length 46,963 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-2088902
vOTU ID	vOTU-074246
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029505\|Ga0244823_100394\|provirus_179_47141
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.56
Jumbo phage	No

Genome content
Genome length	46,963 bps
GC content	39.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.51%
Average CDS length	677.48 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2088902_1	KOfam	K14059	int; integrase	NA
UHGV-2088902_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2088902_1	UniRef90	UniRef90_R6RH38	Prophage LambdaCh01 site-specific recombinase phage integrase family	NA
UHGV-2088902_1	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-2088902_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2088902_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2088902_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2088902_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-2088902_2	PHROG	phrog_8036	NA	unknown function
UHGV-2088902_2	UniRef90	UniRef90_UPI0015710B2D	DNA damage-inducible protein D	NA
UHGV-2088902_2	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-2088902_2	AcrCatalog	cluster_17589	NA	NA
UHGV-2088902_2	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-2088902_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2088902_2	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-2088902_2	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-2088902_2	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-2088902_4	PHROG	phrog_16607	NA	unknown function
UHGV-2088902_4	eggNOG-mapper	1158601.I585_02430	NA	NA
UHGV-2088902_5	PHROG	phrog_87	metallo-protease	other
UHGV-2088902_5	UniRef90	UniRef90_A0A2Z4UCQ9	Zn peptidase	NA
UHGV-2088902_5	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-2088902_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2088902_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2088902_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2088902_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2088902_6	UniRef90	UniRef90_A0A2Z4UCW2	XRE family transcriptional regulator	NA
UHGV-2088902_6	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-2088902_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2088902_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2088902_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2088902_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2088902_7	UniRef90	UniRef90_F3AXV7	HTH cro/C1-type domain-containing protein	NA
UHGV-2088902_7	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-2088902_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2088902_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2088902_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2088902_10	UniRef90	UniRef90_R6RP27	HTH cro/C1-type domain-containing protein	NA
UHGV-2088902_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2088902_10	Structural annotation	PF13560, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-2088902_11	PHROG	phrog_30860	NA	unknown function
UHGV-2088902_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2088902_14	eggNOG-mapper	1235793.C809_03589	NA	NA
UHGV-2088902_14	Structural annotation	PF21578	NA	NA
UHGV-2088902_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2088902_15	UniRef90	UniRef90_A0A1Y3SG05	RNase H type-1 domain-containing protein	NA
UHGV-2088902_15	eggNOG-mapper	445335.CBN_0432	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2088902_15	Pfam	PF00075	RNase H	RNase_H
UHGV-2088902_15	COG	COG0328	Ribonuclease HI	NA
UHGV-2088902_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2088902_16	PHROG	phrog_7566	NA	unknown function
UHGV-2088902_16	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-2088902_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2088902_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2088902_17	UniRef90	UniRef90_A0A2Z4UEP8	Single-stranded DNA-binding protein	NA
UHGV-2088902_17	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-2088902_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2088902_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2088902_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2088902_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2088902_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2088902_19	PHROG	phrog_15077	NA	unknown function
UHGV-2088902_19	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-2088902_20	PHROG	phrog_17690	NA	unknown function
UHGV-2088902_20	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-2088902_20	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-2088902_21	eggNOG-mapper	1449050.JNLE01000005_gene3947	NA	NA
UHGV-2088902_22	PHROG	phrog_37410	NA	unknown function
UHGV-2088902_24	UniRef90	UniRef90_UPI00189FCF13	NA	NA
UHGV-2088902_24	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-2088902_25	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-2088902_27	PHROG	phrog_29188	NA	unknown function
UHGV-2088902_29	PHROG	phrog_19011	NA	unknown function
UHGV-2088902_29	Structural annotation	PF18359, COG4466	NA	NA
UHGV-2088902_30	PHROG	phrog_11237	NA	unknown function
UHGV-2088902_30	eggNOG-mapper	478749.BRYFOR_08581	NA	NA
UHGV-2088902_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2088902_31	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2088902_31	UniRef90	UniRef90_UPI00156D7862	terminase small subunit	NA
UHGV-2088902_31	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2088902_31	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2088902_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2088902_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-2088902_31	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2088902_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2088902_32	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2088902_32	UniRef90	UniRef90_A0A1Y4VK78	Terminase	NA
UHGV-2088902_32	eggNOG-mapper	1235798.C817_03482	Terminase-like family	NA
UHGV-2088902_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2088902_32	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2088902_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2088902_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-2088902_32	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2088902_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-2088902_33	UniRef90	UniRef90_A0A1Y4VKB2	Phage portal protein	NA
UHGV-2088902_33	eggNOG-mapper	1235798.C817_03481	Phage portal protein, SPP1 family	NA
UHGV-2088902_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2088902_33	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2088902_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2088902_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2088902_34	UniRef90	UniRef90_UPI0015ECA384	minor capsid protein	NA
UHGV-2088902_34	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2088902_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2088902_34	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-2088902_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2088902_34	COG	COG2369	NA	NA
UHGV-2088902_34	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-2088902_35	PHROG	phrog_11520	NA	unknown function
UHGV-2088902_35	eggNOG-mapper	1209989.TepiRe1_1148	NA	NA
UHGV-2088902_35	Structural annotation	PF14337	NA	NA
UHGV-2088902_36	KOfam	K07584	NA	NA
UHGV-2088902_36	PHROG	phrog_4478	peptidase	other
UHGV-2088902_36	UniRef90	UniRef90_UPI000830E3BF	ribosomal-processing cysteine protease Prp	NA
UHGV-2088902_36	eggNOG-mapper	1235798.C817_03478	Pfam:Peptidase_C108	NA
UHGV-2088902_36	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2088902_36	COG	COG2868	NA	NA
UHGV-2088902_36	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2088902_37	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2088902_37	UniRef90	UniRef90_UPI001959E043	NA	NA
UHGV-2088902_37	eggNOG-mapper	476272.RUMHYD_02853	NA	NA
UHGV-2088902_37	Pfam	PF14265	NA	DUF4355
UHGV-2088902_37	Structural annotation	PF14265	NA	NA
UHGV-2088902_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-2088902_38	UniRef90	UniRef90_UPI00195ED5D6	phage major capsid protein	NA
UHGV-2088902_38	eggNOG-mapper	1235798.C817_03476	COG NOG20168 non supervised orthologous group	NA
UHGV-2088902_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2088902_38	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2088902_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2088902_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2088902_38	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2088902_39	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2088902_39	UniRef90	UniRef90_UPI00195E7F40	phage head-tail connector protein	NA
UHGV-2088902_39	eggNOG-mapper	1235798.C817_03475	Phage gp6-like head-tail connector protein	NA
UHGV-2088902_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2088902_39	Structural annotation	PF05135	NA	NA
UHGV-2088902_40	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2088902_40	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2088902_40	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2088902_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2088902_41	UniRef90	UniRef90_UPI001BADC8E2	HK97 gp10 family phage protein	NA
UHGV-2088902_41	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2088902_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2088902_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2088902_41	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2088902_42	PHROG	phrog_176	tail terminator	connector
UHGV-2088902_42	UniRef90	UniRef90_UPI00051ADDDD	NA	NA
UHGV-2088902_42	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2088902_42	Structural annotation	PF11367	NA	NA
UHGV-2088902_43	PHROG	phrog_238	major tail protein	tail
UHGV-2088902_43	UniRef90	UniRef90_A0A174PKY3	Phage major tail protein, TP901-1 family	NA
UHGV-2088902_43	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2088902_43	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2088902_43	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2088902_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2088902_44	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2088902_44	UniRef90	UniRef90_A0A174PQ19	NA	NA
UHGV-2088902_44	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-2088902_44	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2088902_44	Structural annotation	PF12363	NA	NA
UHGV-2088902_45	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2088902_45	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-2088902_46	PHROG	phrog_1204	tail protein	tail
UHGV-2088902_46	UniRef90	UniRef90_UPI00195B14B2	tape measure protein	NA
UHGV-2088902_46	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-2088902_46	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2088902_46	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2088902_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2088902_46	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2088902_47	PHROG	phrog_5163	minor tail protein	tail
UHGV-2088902_47	UniRef90	UniRef90_A0A1C5RIA0	Phage-related protein	NA
UHGV-2088902_47	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-2088902_47	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2088902_47	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2088902_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-2088902_47	Structural annotation	PF05709, PF11614, TIGR01633, COG4722	NA	NA
UHGV-2088902_48	PHROG	phrog_9478	minor tail protein	tail
UHGV-2088902_48	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-2088902_48	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-2088902_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2088902_48	Structural annotation	PF14594, PF09486, PF16990, TIGR01665, TIGR02559, COG4926, COG1579	NA	NA
UHGV-2088902_49	eggNOG-mapper	1410626.JHXB01000004_gene213	NA	NA
UHGV-2088902_49	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-2088902_49	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-2088902_49	COG	COG1579	Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain	NA
UHGV-2088902_50	PHROG	phrog_19695	NA	unknown function
UHGV-2088902_50	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-2088902_50	Structural annotation	PF19714	NA	NA
UHGV-2088902_51	PHROG	phrog_16164	NA	unknown function
UHGV-2088902_51	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-2088902_51	Structural annotation	PF10651, PF20328	NA	NA
UHGV-2088902_52	PHROG	phrog_18593	NA	unknown function
UHGV-2088902_52	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-2088902_53	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2088902_53	UniRef90	UniRef90_UPI000930030C	helix-turn-helix transcriptional regulator	NA
UHGV-2088902_53	eggNOG-mapper	397288.C806_02605	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2088902_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2088902_53	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2088902_53	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2088902_55	UniRef90	UniRef90_A0A7X5L6Q7	DNA-binding protein	NA
UHGV-2088902_55	eggNOG-mapper	394503.Ccel_1847	Helix-turn-helix domain	NA
UHGV-2088902_55	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2088902_56	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2088902_56	UniRef90	UniRef90_A0A413PMY6	NA	NA
UHGV-2088902_56	eggNOG-mapper	588581.Cpap_0869	Helix-turn-helix domain	NA
UHGV-2088902_56	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2088902_56	Pfam	PF19481	NA	DUF6017
UHGV-2088902_56	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-2088902_56	Structural annotation	PF19481, TIGR04176, COG3355	NA	NA
UHGV-2088902_60	KOfam	K14059	int; integrase	NA
UHGV-2088902_60	PHROG	phrog_1	integrase	integration and excision
UHGV-2088902_60	UniRef90	UniRef90_A0A413PMX2	Site-specific integrase	NA
UHGV-2088902_60	eggNOG-mapper	857293.CAAU_0978	Belongs to the 'phage' integrase family	NA
UHGV-2088902_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2088902_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2088902_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2088902_60	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2088902_61	PHROG	phrog_937	hemolysin	other
UHGV-2088902_61	eggNOG-mapper	478749.BRYFOR_07561	NA	NA
UHGV-2088902_62	PHROG	phrog_443	holin	lysis
UHGV-2088902_62	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-2088902_62	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-2088902_62	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2088902_62	Structural annotation	PF16945	NA	NA
UHGV-2088902_63	KOfam	K07273	acm; lysozyme	NA
UHGV-2088902_63	PHROG	phrog_291	endolysin	lysis
UHGV-2088902_63	UniRef90	UniRef90_R6SK78	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-2088902_63	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-2088902_63	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2088902_63	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2088902_63	Pfam	PF01476	LysM domain	LysM
UHGV-2088902_63	COG	COG1388	LysM repeat	NA
UHGV-2088902_63	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA