UHGV-2089050

Genome information

Genome length 37,375 bps

CDS count 58

Completeness 87.39% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-2089050
vOTU ID	vOTU-022107
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029495\|Ga0244015_1000172\|provirus_316_37690
BioSample	SAMN05971729
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.2
Jumbo phage	No

Genome content
Genome length	37,375 bps
GC content	53.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.65%
Average CDS length	608.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2089050_1	PHROG	phrog_435	endolysin	lysis
UHGV-2089050_1	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2089050_1	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2089050_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2089050_1	Pfam	PF05036	SPOR domain	SPOR
UHGV-2089050_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2089050_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2089050_2	PHROG	phrog_26878	virion structural protein	head and packaging
UHGV-2089050_2	eggNOG-mapper	1423755.BAML01000004_gene368	lipolytic protein G-D-S-L family	NA
UHGV-2089050_2	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2089050_3	PHROG	phrog_372	tail protein	tail
UHGV-2089050_3	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-2089050_3	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-2089050_3	Pfam	PF05895	NA	DUF859
UHGV-2089050_3	COG	COG4675	Phage tail collar domain	NA
UHGV-2089050_3	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-2089050_4	PHROG	phrog_6616	tail protein	tail
UHGV-2089050_4	UniRef90	UniRef90_R5GWP5	KID repeat family protein	NA
UHGV-2089050_4	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-2089050_4	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2089050_5	PHROG	phrog_1194	NA	unknown function
UHGV-2089050_5	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-2089050_5	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-2089050_5	Pfam	PF20458	NA	DUF6711
UHGV-2089050_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2089050_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2089050_6	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2089050_6	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-2089050_6	COG	COG1511	NA	NA
UHGV-2089050_6	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-2089050_7	PHROG	phrog_706	NA	unknown function
UHGV-2089050_7	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-2089050_7	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2089050_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2089050_7	Structural annotation	PF06854	NA	NA
UHGV-2089050_8	PHROG	phrog_11299	NA	unknown function
UHGV-2089050_8	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-2089050_8	Structural annotation	PF10666	NA	NA
UHGV-2089050_9	PHROG	phrog_3099	NA	unknown function
UHGV-2089050_9	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-2089050_9	Structural annotation	TIGR02126	NA	NA
UHGV-2089050_10	PHROG	phrog_3266	tail completion	connector
UHGV-2089050_10	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-2089050_10	Structural annotation	PF12691	NA	NA
UHGV-2089050_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2089050_11	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-2089050_11	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-2089050_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2089050_11	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-2089050_12	PHROG	phrog_3366	NA	unknown function
UHGV-2089050_12	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-2089050_12	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2089050_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2089050_13	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-2089050_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-2089050_14	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-2089050_14	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-2089050_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2089050_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2089050_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2089050_14	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2089050_15	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-2089050_15	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-2089050_15	Structural annotation	PF06810	NA	NA
UHGV-2089050_16	Structural annotation	PF18152	NA	NA
UHGV-2089050_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2089050_17	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-2089050_17	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-2089050_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2089050_17	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-2089050_17	COG	COG2369	NA	NA
UHGV-2089050_17	Structural annotation	PF06152, PF18825	NA	NA
UHGV-2089050_18	PHROG	phrog_8680	NA	unknown function
UHGV-2089050_18	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-2089050_18	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2089050_18	Pfam	PF14386	NA	DUF4417
UHGV-2089050_18	Structural annotation	PF14386	NA	NA
UHGV-2089050_19	PHROG	phrog_9479	NA	unknown function
UHGV-2089050_19	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-2089050_19	Structural annotation	PF15529	NA	NA
UHGV-2089050_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-2089050_21	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-2089050_21	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-2089050_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2089050_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2089050_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2089050_22	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2089050_22	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-2089050_22	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-2089050_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2089050_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2089050_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2089050_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-2089050_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2089050_23	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2089050_23	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-2089050_23	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-2089050_23	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2089050_23	Structural annotation	PF16677	NA	NA
UHGV-2089050_24	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-2089050_24	Structural annotation	TIGR01636	NA	NA
UHGV-2089050_31	Structural annotation	PF04570	NA	NA
UHGV-2089050_32	PHROG	phrog_3136	NA	unknown function
UHGV-2089050_32	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-2089050_32	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-2089050_32	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2089050_32	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-2089050_34	PHROG	phrog_7704	NA	unknown function
UHGV-2089050_34	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-2089050_34	Pfam	PF04448	NA	DUF551
UHGV-2089050_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2089050_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2089050_36	PHROG	phrog_757	DNA methyltransferase	other
UHGV-2089050_36	UniRef90	UniRef90_A0A8D9PDD1	DNA (Cytosine 5) methyltransferase	NA
UHGV-2089050_36	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-2089050_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2089050_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2089050_36	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-2089050_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2089050_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2089050_38	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-2089050_38	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2089050_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2089050_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2089050_38	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-2089050_39	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2089050_39	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-2089050_39	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-2089050_39	Pfam	PF06356	NA	DUF1064
UHGV-2089050_39	Structural annotation	PF06356	NA	NA
UHGV-2089050_41	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2089050_41	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2089050_41	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-2089050_41	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-2089050_41	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2089050_41	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2089050_41	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2089050_42	PHROG	phrog_15768	NA	unknown function
UHGV-2089050_42	UniRef90	UniRef90_A0A416HMA1	NA	NA
UHGV-2089050_42	eggNOG-mapper	445970.ALIPUT_02689	DNA-binding transcription factor activity	NA
UHGV-2089050_42	AcrCatalog	cluster_38323	NA	NA
UHGV-2089050_42	Pfam	PF19808	NA	DUF6291
UHGV-2089050_42	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-2089050_42	Structural annotation	PF19808	NA	NA
UHGV-2089050_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2089050_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2089050_44	UniRef90	UniRef90_A0A350TKS2	Single-stranded DNA-binding protein	NA
UHGV-2089050_44	eggNOG-mapper	1007096.BAGW01000030_gene5	Single-strand binding protein family	NA
UHGV-2089050_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2089050_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2089050_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2089050_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2089050_44	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2089050_45	PHROG	phrog_7566	NA	unknown function
UHGV-2089050_45	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-2089050_45	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-2089050_46	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2089050_46	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2089050_46	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2089050_46	Structural annotation	PF05772	NA	NA
UHGV-2089050_47	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2089050_47	UniRef90	UniRef90_UPI001D07A468	phage recombination protein Bet	NA
UHGV-2089050_47	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-2089050_47	Pfam	PF03837	RecT family	RecT
UHGV-2089050_47	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2089050_47	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2089050_47	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2089050_48	PHROG	phrog_674	NA	unknown function
UHGV-2089050_48	UniRef90	UniRef90_UPI001D085352	NA	NA
UHGV-2089050_48	eggNOG-mapper	1121441.AUCX01000014_gene537	NA	NA
UHGV-2089050_48	Pfam	PF07083	NA	DUF1351
UHGV-2089050_48	Structural annotation	PF07083	NA	NA
UHGV-2089050_49	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2089050_49	UniRef90	UniRef90_UPI001D0928A0	YqaJ viral recombinase family protein	NA
UHGV-2089050_49	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-2089050_49	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2089050_49	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2089050_49	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2089050_49	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2089050_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2089050_52	UniRef90	UniRef90_A0A396KCA9	XRE family transcriptional regulator	NA
UHGV-2089050_52	eggNOG-mapper	1497679.EP56_15175	Helix-turn-helix XRE-family like proteins	NA
UHGV-2089050_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2089050_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2089050_52	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2089050_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2089050_53	UniRef90	UniRef90_A0A2Z4QBH4	HTH cro/C1-type domain-containing protein	NA
UHGV-2089050_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2089050_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2089050_53	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-2089050_56	UniRef90	UniRef90_A0A6J6XLY5	Unannotated protein	NA
UHGV-2089050_56	eggNOG-mapper	483216.BACEGG_01163	NA	NA
UHGV-2089050_57	UniRef90	UniRef90_R5HRH2	DNA-binding helix-turn-helix protein	NA
UHGV-2089050_57	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-2089050_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2089050_57	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2089050_57	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-2089050_58	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2089050_58	PHROG	phrog_95	integrase	integration and excision
UHGV-2089050_58	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-2089050_58	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2089050_58	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2089050_58	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2089050_58	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2089050_58	Structural annotation	PF00239, NF041201, COG1961	NA	NA