UHGV-2089400

Genome information

Genome length 34,473 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9481

Prediction confidence Confident

Genome information
Genome ID	UHGV-2089400
vOTU ID	vOTU-010104
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029465\|Ga0244121_100024\|provirus_12970_77361
BioSample	SAMEA3708526
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9481
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.03
Jumbo phage	No

Genome content
Genome length	34,473 bps
GC content	39.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	88.94%
Average CDS length	615.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2089400_1	UniRef90	UniRef90_A0A2N0UVG0	CBM26 domain-containing protein	NA
UHGV-2089400_1	eggNOG-mapper	33905.BTHE_1898	Belongs to the glycosyl hydrolase 31 family	NA
UHGV-2089400_1	Pfam	PF16738	Starch-binding module 26	CBM26
UHGV-2089400_1	COG	COG1501	Alpha-glucosidase/xylosidase, GH31 family	NA
UHGV-2089400_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2089400_5	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2089400_5	UniRef90	UniRef90_A0A374DDR5	Methyltransferase	NA
UHGV-2089400_5	eggNOG-mapper	877240.E1AC06_9CAUD	helicase activity	NA
UHGV-2089400_5	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2089400_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2089400_5	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2089400_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2089400_6	PHROG	phrog_20388	endolysin	lysis
UHGV-2089400_6	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2089400_6	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2089400_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2089400_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2089400_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2089400_6	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-2089400_7	PHROG	phrog_443	holin	lysis
UHGV-2089400_7	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-2089400_7	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-2089400_7	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2089400_7	Structural annotation	PF16945	NA	NA
UHGV-2089400_8	PHROG	phrog_1863	NA	unknown function
UHGV-2089400_8	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-2089400_8	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-2089400_10	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-2089400_10	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-2089400_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2089400_11	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-2089400_11	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-2089400_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2089400_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2089400_11	COG	COG1511	NA	NA
UHGV-2089400_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2089400_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2089400_12	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-2089400_12	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-2089400_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-2089400_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2089400_13	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-2089400_13	PHROG	phrog_5218	NA	unknown function
UHGV-2089400_13	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-2089400_13	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-2089400_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2089400_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2089400_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2089400_14	Structural annotation	PF11836	NA	NA
UHGV-2089400_15	PHROG	phrog_88	major tail protein	tail
UHGV-2089400_15	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-2089400_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2089400_15	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2089400_16	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-2089400_16	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2089400_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2089400_16	Structural annotation	TIGR01725	NA	NA
UHGV-2089400_17	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-2089400_18	PHROG	phrog_19734	NA	unknown function
UHGV-2089400_18	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-2089400_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2089400_19	PHROG	phrog_749	NA	unknown function
UHGV-2089400_19	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-2089400_19	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-2089400_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-2089400_20	UniRef90	UniRef90_UPI000E4BAA71	phage major capsid protein	NA
UHGV-2089400_20	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-2089400_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2089400_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2089400_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2089400_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2089400_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2089400_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2089400_21	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2089400_21	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-2089400_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2089400_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2089400_21	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2089400_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-2089400_22	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-2089400_22	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-2089400_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2089400_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2089400_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2089400_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2089400_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2089400_23	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-2089400_23	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-2089400_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2089400_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2089400_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2089400_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2089400_24	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2089400_24	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-2089400_24	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-2089400_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2089400_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2089400_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2089400_25	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-2089400_25	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-2089400_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2089400_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2089400_26	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-2089400_26	Structural annotation	TIGR01636	NA	NA
UHGV-2089400_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2089400_27	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-2089400_27	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2089400_31	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-2089400_31	Structural annotation	PF15597	NA	NA
UHGV-2089400_32	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2089400_32	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-2089400_32	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-2089400_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2089400_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2089400_32	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-2089400_34	PHROG	phrog_824	NA	unknown function
UHGV-2089400_34	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-2089400_34	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-2089400_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2089400_34	Structural annotation	PF08774	NA	NA
UHGV-2089400_35	PHROG	phrog_24518	NA	unknown function
UHGV-2089400_35	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-2089400_36	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2089400_36	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2089400_36	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-2089400_36	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-2089400_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2089400_36	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2089400_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2089400_36	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2089400_40	Structural annotation	COG1862	NA	NA
UHGV-2089400_41	PHROG	phrog_6058	NA	unknown function
UHGV-2089400_41	Structural annotation	NF033787	NA	NA
UHGV-2089400_42	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-2089400_42	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2089400_42	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2089400_43	PHROG	phrog_8684	NA	unknown function
UHGV-2089400_43	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-2089400_43	eggNOG-mapper	1450694.BTS2_0501	YopX protein	NA
UHGV-2089400_43	Pfam	PF09643	YopX protein	YopX
UHGV-2089400_43	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2089400_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2089400_44	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2089400_44	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2089400_44	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2089400_44	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2089400_44	PADLOC	BrxP_00001	BrxP	BREX
UHGV-2089400_44	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2089400_44	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2089400_44	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-2089400_46	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-2089400_46	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-2089400_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2089400_46	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-2089400_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2089400_47	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-2089400_47	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-2089400_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2089400_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2089400_47	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-2089400_48	PHROG	phrog_1914	NA	unknown function
UHGV-2089400_48	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2089400_48	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2089400_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2089400_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2089400_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2089400_49	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-2089400_49	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2089400_49	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-2089400_50	KOfam	K14059	int; integrase	NA
UHGV-2089400_50	PHROG	phrog_1	integrase	integration and excision
UHGV-2089400_50	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-2089400_50	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-2089400_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2089400_50	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2089400_50	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA