UHGV-2089512

Genome information

Genome length 46,675 bps

CDS count 76

Completeness 81.89% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-2089512
vOTU ID	vOTU-031835
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029452\|Ga0244083_100131\|provirus_29223_77461
BioSample	SAMEA3708488
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.61
Jumbo phage	No

Genome content
Genome length	46,675 bps
GC content	36.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	90.98%
Average CDS length	560.96 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2089512_1	KOfam	K14059	int; integrase	NA
UHGV-2089512_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2089512_1	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-2089512_1	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-2089512_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2089512_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2089512_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2089512_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2089512_2	PHROG	phrog_16129	excisionase	integration and excision
UHGV-2089512_2	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-2089512_2	eggNOG-mapper	658088.HMPREF0987_01415	Excisionase from transposon Tn916	NA
UHGV-2089512_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2089512_2	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-2089512_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2089512_2	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-2089512_5	PHROG	phrog_9804	NA	unknown function
UHGV-2089512_5	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-2089512_5	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-2089512_5	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2089512_5	Structural annotation	PF11417	NA	NA
UHGV-2089512_6	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2089512_6	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-2089512_6	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-2089512_6	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-2089512_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2089512_8	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2089512_8	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-2089512_8	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-2089512_8	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2089512_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2089512_8	COG	COG0863	DNA modification methylase	NA
UHGV-2089512_8	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2089512_11	PHROG	phrog_19106	NA	unknown function
UHGV-2089512_11	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-2089512_11	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-2089512_11	Structural annotation	TIGR01453	NA	NA
UHGV-2089512_13	PHROG	phrog_10714	NA	unknown function
UHGV-2089512_13	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-2089512_13	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-2089512_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2089512_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2089512_14	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-2089512_14	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-2089512_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2089512_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2089512_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2089512_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2089512_14	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2089512_15	PHROG	phrog_8684	NA	unknown function
UHGV-2089512_15	UniRef90	UniRef90_UPI001D033076	YopX family protein	NA
UHGV-2089512_15	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-2089512_15	Pfam	PF09643	YopX protein	YopX
UHGV-2089512_15	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2089512_15	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2089512_19	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2089512_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2089512_19	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-2089512_19	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-2089512_19	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2089512_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2089512_19	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2089512_20	PHROG	phrog_25456	NA	unknown function
UHGV-2089512_21	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2089512_21	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-2089512_21	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-2089512_21	Pfam	PF03837	RecT family	RecT
UHGV-2089512_21	Structural annotation	NF007351, COG3723	NA	NA
UHGV-2089512_23	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2089512_23	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2089512_23	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-2089512_23	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-2089512_23	Pfam	PF13476	AAA domain	AAA_23
UHGV-2089512_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2089512_23	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2089512_25	PHROG	phrog_26861	NA	unknown function
UHGV-2089512_25	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-2089512_25	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-2089512_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2089512_25	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-2089512_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2089512_25	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-2089512_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2089512_32	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2089512_32	UniRef90	UniRef90_R7BII5	AntA domain-containing protein	NA
UHGV-2089512_32	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-2089512_32	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2089512_32	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2089512_32	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-2089512_34	PHROG	phrog_32192	NA	unknown function
UHGV-2089512_34	UniRef90	UniRef90_UPI001D0221FF	alanine-zipper protein	NA
UHGV-2089512_35	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2089512_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2089512_35	UniRef90	UniRef90_R7BIH5	DNA-binding helix-turn-helix protein	NA
UHGV-2089512_35	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-2089512_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2089512_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2089512_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2089512_35	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-2089512_36	KOfam	K07273	acm; lysozyme	NA
UHGV-2089512_36	PHROG	phrog_6745	endolysin	lysis
UHGV-2089512_36	UniRef90	UniRef90_A0A7U9NG87	Autolytic lysozyme	NA
UHGV-2089512_36	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-2089512_36	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2089512_36	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2089512_36	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-2089512_38	PHROG	phrog_6616	tail protein	tail
UHGV-2089512_38	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-2089512_38	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-2089512_38	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2089512_38	COG	COG4926	Phage-related protein	NA
UHGV-2089512_38	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2089512_39	Structural annotation	PF07761	NA	NA
UHGV-2089512_40	PHROG	phrog_1194	NA	unknown function
UHGV-2089512_40	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-2089512_40	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2089512_43	PHROG	phrog_23726	NA	unknown function
UHGV-2089512_43	UniRef90	UniRef90_A0A1M5TXV8	Zinc-ribbon domain-containing protein	NA
UHGV-2089512_43	eggNOG-mapper	1384484.AEQU_1334	cell wall organization	NA
UHGV-2089512_43	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-2089512_44	PHROG	phrog_28918	NA	unknown function
UHGV-2089512_44	UniRef90	UniRef90_A0A1C5WKI4	Phage-related protein	NA
UHGV-2089512_44	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-2089512_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2089512_46	PHROG	phrog_36112	NA	unknown function
UHGV-2089512_46	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-2089512_46	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-2089512_46	Structural annotation	PF10666	NA	NA
UHGV-2089512_48	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-2089512_48	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2089512_49	Structural annotation	PF05657	NA	NA
UHGV-2089512_50	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2089512_50	UniRef90	UniRef90_A0A6L8SWJ4	AP2 domain-containing protein	NA
UHGV-2089512_50	eggNOG-mapper	397290.C810_05173	NA	NA
UHGV-2089512_50	Structural annotation	PF17375	NA	NA
UHGV-2089512_51	UniRef90	UniRef90_UPI000AABEC73	LLM class flavin-dependent oxidoreductase	NA
UHGV-2089512_51	eggNOG-mapper	1499683.CCFF01000017_gene2117	NA	NA
UHGV-2089512_51	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-2089512_52	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-2089512_52	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-2089512_53	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-2089512_53	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2089512_54	PHROG	phrog_1129	holin	lysis
UHGV-2089512_54	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-2089512_54	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2089512_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2089512_54	Structural annotation	PF06946	NA	NA
UHGV-2089512_55	PHROG	phrog_1863	NA	unknown function
UHGV-2089512_55	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-2089512_56	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-2089512_57	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-2089512_57	Structural annotation	PF21169	NA	NA
UHGV-2089512_58	PHROG	phrog_29	major head protein	head and packaging
UHGV-2089512_58	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-2089512_58	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-2089512_58	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2089512_58	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-2089512_59	PHROG	phrog_909	major head protein	head and packaging
UHGV-2089512_59	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-2089512_60	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-2089512_61	PHROG	phrog_64	portal protein	head and packaging
UHGV-2089512_61	UniRef90	UniRef90_UPI001BC653D1	Phage portal protein	NA
UHGV-2089512_61	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2089512_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2089512_61	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2089512_62	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-2089512_63	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2089512_63	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-2089512_63	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-2089512_63	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2089512_63	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-2089512_64	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2089512_64	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-2089512_64	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-2089512_64	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2089512_64	COG	COG5410	NA	NA
UHGV-2089512_64	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2089512_69	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-2089512_71	eggNOG-mapper	139870.Q6SE91_9CAUD	NA	NA
UHGV-2089512_72	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-2089512_72	Structural annotation	PF05225, COG2886	NA	NA
UHGV-2089512_73	PHROG	phrog_22444	NA	unknown function
UHGV-2089512_73	UniRef90	UniRef90_A0A5S3QIX1	Helix-turn-helix transcriptional regulator	NA
UHGV-2089512_73	eggNOG-mapper	1121422.AUMW01000042_gene1260	DnaD domain protein	NA
UHGV-2089512_73	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2089512_73	Structural annotation	PF05584, NF000243, COG0640	NA	NA
UHGV-2089512_74	Structural annotation	PF12990	NA	NA
UHGV-2089512_76	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-2089512_76	UniRef90	UniRef90_R7BGE2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2089512_76	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2089512_76	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-2089512_76	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-2089512_76	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA