UHGV-2090175

Genome information

Genome length 43,665 bps

CDS count 64

Completeness 100.00% (complete)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-2090175
vOTU ID	vOTU-059321
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029478\|Ga0244154_100278
BioSample	SAMEA3708559
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.3
Jumbo phage	No

Genome content
Genome length	43,665 bps
GC content	52.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.39%
Average CDS length	628.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2090175_1	PHROG	phrog_4433	NA	unknown function
UHGV-2090175_1	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-2090175_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2090175_2	Structural annotation	PF17259	NA	NA
UHGV-2090175_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2090175_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2090175_5	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-2090175_5	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2090175_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2090175_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2090175_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2090175_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2090175_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2090175_6	UniRef90	UniRef90_A0A212J3J9	HTH cro/C1-type domain-containing protein	NA
UHGV-2090175_6	eggNOG-mapper	1280663.ATVR01000017_gene1155	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2090175_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2090175_6	COG	COG3780	DNA endonuclease related to intein-encoded endonucleases	NA
UHGV-2090175_6	Structural annotation	PF01381, MF_00535, NF007257, COG3655	NA	NA
UHGV-2090175_8	Structural annotation	PF15729	NA	NA
UHGV-2090175_9	KOfam	K14059	int; integrase	NA
UHGV-2090175_9	PHROG	phrog_1	integrase	integration and excision
UHGV-2090175_9	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-2090175_9	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-2090175_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2090175_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2090175_9	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2090175_12	UniRef90	UniRef90_W1I488	Uncultured bacterium extrachromosomal DNA RGI00017	NA
UHGV-2090175_12	eggNOG-mapper	1232436.CAPF01000086_gene855	NA	NA
UHGV-2090175_14	PHROG	phrog_15863	NA	unknown function
UHGV-2090175_14	UniRef90	UniRef90_A0A3A8WEZ5	J domain-containing protein	NA
UHGV-2090175_14	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-2090175_14	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-2090175_15	Pfam	PF08681	NA	DUF1778
UHGV-2090175_17	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-2090175_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2090175_17	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-2090175_17	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-2090175_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-2090175_17	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-2090175_19	PHROG	phrog_35275	NA	unknown function
UHGV-2090175_19	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-2090175_20	PHROG	phrog_371	major head protein	head and packaging
UHGV-2090175_20	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-2090175_20	eggNOG-mapper	1519439.JPJG01000060_gene1890	NA	NA
UHGV-2090175_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2090175_22	PHROG	phrog_156	portal protein	head and packaging
UHGV-2090175_22	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-2090175_22	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2090175_23	PHROG	phrog_13046	NA	unknown function
UHGV-2090175_23	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-2090175_23	Structural annotation	PF20387	NA	NA
UHGV-2090175_24	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-2090175_24	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-2090175_24	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-2090175_25	PHROG	phrog_13589	NA	unknown function
UHGV-2090175_25	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-2090175_28	KOfam	K07273	acm; lysozyme	NA
UHGV-2090175_28	PHROG	phrog_291	endolysin	lysis
UHGV-2090175_28	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-2090175_28	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-2090175_28	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2090175_28	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2090175_28	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2090175_28	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-2090175_29	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-2090175_30	PHROG	phrog_13256	NA	unknown function
UHGV-2090175_30	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-2090175_32	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-2090175_33	KOfam	K19666	solR, cepR, tofR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR	NA
UHGV-2090175_33	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2090175_33	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2090175_33	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-2090175_34	PHROG	phrog_21718	NA	unknown function
UHGV-2090175_35	PHROG	phrog_22984	NA	unknown function
UHGV-2090175_36	PHROG	phrog_16490	NA	unknown function
UHGV-2090175_36	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-2090175_37	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2090175_38	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-2090175_39	Structural annotation	PF08281, MF_00674, TIGR01636	NA	NA
UHGV-2090175_45	PHROG	phrog_9958	NA	unknown function
UHGV-2090175_45	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-2090175_45	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-2090175_45	Structural annotation	PF19789	NA	NA
UHGV-2090175_51	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2090175_52	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2090175_52	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2090175_52	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2090175_52	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-2090175_52	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2090175_52	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2090175_52	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2090175_55	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2090175_55	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2090175_55	UniRef90	UniRef90_A0A1Y4J2T6	SF4 helicase domain-containing protein	NA
UHGV-2090175_55	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-2090175_55	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2090175_55	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2090175_55	COG	COG0305	Replicative DNA helicase	NA
UHGV-2090175_55	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2090175_56	PHROG	phrog_15768	NA	unknown function
UHGV-2090175_56	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-2090175_56	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-2090175_57	PHROG	phrog_4973	NA	unknown function
UHGV-2090175_57	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-2090175_57	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-2090175_57	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-2090175_57	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-2090175_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2090175_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2090175_58	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-2090175_58	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-2090175_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2090175_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2090175_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2090175_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2090175_58	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-2090175_59	PHROG	phrog_7566	NA	unknown function
UHGV-2090175_59	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-2090175_60	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2090175_60	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2090175_60	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2090175_60	Structural annotation	PF05772	NA	NA
UHGV-2090175_61	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-2090175_64	PHROG	phrog_27197	NA	unknown function
UHGV-2090175_64	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-2090175_64	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2090175_64	Structural annotation	NF007410	NA	NA