UHGV-2090328

Genome information

vOTU vOTU-022043

Genome length 31,965 bps

CDS count 54

Completeness 78.45% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-2090328
vOTU ID	vOTU-022043
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029444\|Ga0243728_1000572\|provirus_136_32100
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.92
Jumbo phage	No

Genome content
Genome length	31,965 bps
GC content	42.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.01%
Average CDS length	542.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2090328_1	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-2090328_1	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2090328_1	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-2090328_4	PHROG	phrog_38832	NA	unknown function
UHGV-2090328_4	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-2090328_4	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-2090328_4	Structural annotation	PF09038	NA	NA
UHGV-2090328_5	UniRef90	UniRef90_A0A352SFV2	NA	NA
UHGV-2090328_5	eggNOG-mapper	1232453.BAIF02000057_gene1153	NA	NA
UHGV-2090328_5	Pfam	PF04448	NA	DUF551
UHGV-2090328_7	COG	COG1413	HEAT repeat	NA
UHGV-2090328_8	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2090328_8	UniRef90	UniRef90_UPI001D09006D	Lar family restriction alleviation protein	NA
UHGV-2090328_8	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2090328_8	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2090328_10	PHROG	phrog_874	NA	unknown function
UHGV-2090328_10	eggNOG-mapper	1235793.C809_02214	NA	NA
UHGV-2090328_10	Pfam	PF04266	ASCH domain	ASCH
UHGV-2090328_10	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2090328_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2090328_13	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-2090328_13	UniRef90	UniRef90_UPI000462F5E4	site-specific DNA-methyltransferase	NA
UHGV-2090328_13	eggNOG-mapper	888049.HMPREF8578_0283	DNA methylase	NA
UHGV-2090328_13	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-2090328_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2090328_13	COG	COG0863	DNA modification methylase	NA
UHGV-2090328_13	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-2090328_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2090328_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2090328_14	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2090328_14	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-2090328_14	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2090328_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2090328_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2090328_14	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2090328_17	PHROG	phrog_2045	NA	unknown function
UHGV-2090328_17	UniRef90	UniRef90_UPI001D0640D9	phage Gp37/Gp68 family protein	NA
UHGV-2090328_17	eggNOG-mapper	1235790.C805_00077	NA	NA
UHGV-2090328_17	Pfam	PF07505	NA	DUF5131
UHGV-2090328_17	COG	COG4422	NA	NA
UHGV-2090328_17	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-2090328_20	UniRef90	UniRef90_A0A3D5M0V6	RHH_1 domain-containing protein	NA
UHGV-2090328_20	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2090328_20	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-2090328_23	UniRef90	UniRef90_UPI0012ABADBF	Arc family DNA-binding protein	NA
UHGV-2090328_24	eggNOG-mapper	1064535.MELS_1123	NA	NA
UHGV-2090328_26	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2090328_26	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2090328_26	UniRef90	UniRef90_A0A8A9IDH7	Nucleoid occlusion protein	NA
UHGV-2090328_26	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-2090328_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2090328_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2090328_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2090328_26	COG	COG0863	DNA modification methylase	NA
UHGV-2090328_26	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2090328_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2090328_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2090328_28	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-2090328_28	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2090328_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2090328_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2090328_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2090328_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2090328_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2090328_29	PHROG	phrog_1233	NA	unknown function
UHGV-2090328_29	eggNOG-mapper	411490.ANACAC_00786	NA	NA
UHGV-2090328_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-2090328_30	UniRef90	UniRef90_A0A1C5MB20	Phage portal protein, putative, A118 family	NA
UHGV-2090328_30	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2090328_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2090328_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2090328_31	eggNOG-mapper	1235790.C805_00048	NA	NA
UHGV-2090328_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2090328_31	Structural annotation	PF11114	NA	NA
UHGV-2090328_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2090328_32	UniRef90	UniRef90_F2JPK1	Minor capsid 2 protein	NA
UHGV-2090328_32	eggNOG-mapper	1235790.C805_00050	Phage minor capsid protein 2	NA
UHGV-2090328_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2090328_32	COG	COG2369	NA	NA
UHGV-2090328_32	Structural annotation	PF06152	NA	NA
UHGV-2090328_33	PHROG	phrog_3754	NA	unknown function
UHGV-2090328_33	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2090328_34	PHROG	phrog_37604	NA	unknown function
UHGV-2090328_34	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-2090328_35	PHROG	phrog_21718	NA	unknown function
UHGV-2090328_35	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-2090328_36	PHROG	phrog_22984	NA	unknown function
UHGV-2090328_37	PHROG	phrog_16490	NA	unknown function
UHGV-2090328_37	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-2090328_39	PHROG	phrog_28802	NA	unknown function
UHGV-2090328_39	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-2090328_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2090328_40	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-2090328_40	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-2090328_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2090328_40	Structural annotation	PF06810	NA	NA
UHGV-2090328_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-2090328_41	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-2090328_41	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-2090328_41	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2090328_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2090328_42	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-2090328_43	PHROG	phrog_18218	NA	unknown function
UHGV-2090328_43	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-2090328_43	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-2090328_43	Structural annotation	PF06946	NA	NA
UHGV-2090328_44	PHROG	phrog_3366	NA	unknown function
UHGV-2090328_44	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2090328_44	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2090328_45	PHROG	phrog_3266	tail completion	connector
UHGV-2090328_45	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2090328_45	Structural annotation	PF12691	NA	NA
UHGV-2090328_46	PHROG	phrog_3099	NA	unknown function
UHGV-2090328_46	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2090328_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2090328_47	PHROG	phrog_11299	NA	unknown function
UHGV-2090328_47	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-2090328_47	Structural annotation	PF10666	NA	NA
UHGV-2090328_48	PHROG	phrog_706	NA	unknown function
UHGV-2090328_48	UniRef90	UniRef90_UPI001C0F2CC6	Gp15 family bacteriophage protein	NA
UHGV-2090328_48	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-2090328_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2090328_48	Structural annotation	PF06854	NA	NA
UHGV-2090328_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2090328_49	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-2090328_49	COG	COG5412	Phage-related protein	NA
UHGV-2090328_50	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-2090328_50	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2090328_51	PHROG	phrog_13879	NA	unknown function
UHGV-2090328_51	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-2090328_51	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2090328_53	PHROG	phrog_18725	NA	unknown function
UHGV-2090328_53	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA