UHGV-2090832

Genome information

Genome length 47,035 bps

CDS count 85

Completeness 94.14% (high-quality)

geNomad score 0.9676

Prediction confidence Confident

Genome information
Genome ID	UHGV-2090832
vOTU ID	vOTU-014402
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029441\|Ga0243753_1000480\|provirus_34892_81926
BioSample	SAMN05971456
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9676
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.02
Jumbo phage	No

Genome content
Genome length	47,035 bps
GC content	32.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	85
CDS density	90.11%
Average CDS length	504.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2090832_1	KOfam	K14059	int; integrase	NA
UHGV-2090832_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2090832_1	UniRef90	UniRef90_UPI000E4C34F1	site-specific integrase	NA
UHGV-2090832_1	eggNOG-mapper	1423743.JCM14108_3128	Belongs to the 'phage' integrase family	NA
UHGV-2090832_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2090832_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2090832_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2090832_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2090832_3	eggNOG-mapper	1235792.C808_05272	NA	NA
UHGV-2090832_3	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-2090832_7	PHROG	phrog_87	metallo-protease	other
UHGV-2090832_7	UniRef90	UniRef90_UPI0018AA4A01	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2090832_7	eggNOG-mapper	1211844.CBLM010000023_gene993	IrrE N-terminal-like domain	NA
UHGV-2090832_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2090832_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2090832_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2090832_8	UniRef90	UniRef90_UPI0018AA4539	helix-turn-helix domain-containing protein	NA
UHGV-2090832_8	eggNOG-mapper	350688.Clos_1286	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2090832_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2090832_8	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2090832_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2090832_9	UniRef90	UniRef90_A0A417I7U0	XRE family transcriptional regulator	NA
UHGV-2090832_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2090832_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2090832_9	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-2090832_11	UniRef90	UniRef90_UPI000E4DC6CD	helix-turn-helix domain-containing protein	NA
UHGV-2090832_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2090832_16	Structural annotation	PF04325, TIGR04116, COG5570	NA	NA
UHGV-2090832_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2090832_17	UniRef90	UniRef90_A0A7I8DYN2	YqaJ domain-containing protein	NA
UHGV-2090832_17	eggNOG-mapper	568816.Acin_1253	YqaJ viral recombinase family protein	NA
UHGV-2090832_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2090832_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2090832_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2090832_17	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-2090832_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2090832_18	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2090832_18	UniRef90	UniRef90_A0A7I8DY97	Oxidoreductase	NA
UHGV-2090832_18	eggNOG-mapper	1123263.AUKY01000076_gene1778	Phage antirepressor protein	NA
UHGV-2090832_18	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2090832_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2090832_18	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2090832_18	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2090832_19	PHROG	phrog_674	NA	unknown function
UHGV-2090832_19	UniRef90	UniRef90_A0A416FZA6	NA	NA
UHGV-2090832_19	Pfam	PF07083	NA	DUF1351
UHGV-2090832_19	Structural annotation	PF07083	NA	NA
UHGV-2090832_21	PHROG	phrog_750	NA	unknown function
UHGV-2090832_21	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2090832_22	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2090832_22	UniRef90	UniRef90_A0A417IHY2	Phage recombination protein Bet	NA
UHGV-2090832_22	eggNOG-mapper	1122173.AXVL01000068_gene1414	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-2090832_22	Pfam	PF03837	RecT family	RecT
UHGV-2090832_22	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2090832_22	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2090832_22	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2090832_24	Structural annotation	PF09681, MF_01177, NF033789, COG0640	NA	NA
UHGV-2090832_25	UniRef90	UniRef90_A0A417IHK4	Inhibitor_G39P domain-containing protein	NA
UHGV-2090832_25	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2090832_25	Structural annotation	PF11417	NA	NA
UHGV-2090832_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2090832_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2090832_26	UniRef90	UniRef90_A0A416FZG2	Single-stranded DNA-binding protein	NA
UHGV-2090832_26	eggNOG-mapper	1211844.CBLM010000119_gene3417	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-2090832_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2090832_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2090832_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2090832_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2090832_26	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-2090832_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2090832_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2090832_28	UniRef90	UniRef90_A0A417IHK0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2090832_28	eggNOG-mapper	1211844.CBLM010000016_gene1505	Endodeoxyribonuclease RusA	NA
UHGV-2090832_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2090832_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2090832_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2090832_30	KOfam	K21029	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	NA
UHGV-2090832_30	UniRef90	UniRef90_A0A417IIR9	ThiF domain-containing protein	NA
UHGV-2090832_30	eggNOG-mapper	428127.EUBDOL_01242	ThiF family	NA
UHGV-2090832_30	PADLOC	E1E2_00006	E1-E2	CBASS
UHGV-2090832_30	Pfam	PF00899	ThiF family	ThiF
UHGV-2090832_30	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-2090832_30	Structural annotation	PF00899, MF_03049, TIGR03736, COG0476	NA	NA
UHGV-2090832_32	UniRef90	UniRef90_A0A1T4LZF6	E2 family protein D	NA
UHGV-2090832_32	Structural annotation	PF14460, TIGR03737	NA	NA
UHGV-2090832_34	Structural annotation	PF01283, NF006816, COG4830	NA	NA
UHGV-2090832_35	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2090832_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2090832_36	eggNOG-mapper	1504823.CCMM01000008_gene1059	NA	NA
UHGV-2090832_38	PHROG	phrog_22292	NA	unknown function
UHGV-2090832_38	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-2090832_39	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2090832_39	UniRef90	UniRef90_A0A417IIQ4	MazG domain-containing protein	NA
UHGV-2090832_39	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-2090832_39	Structural annotation	PF01503, TIGR03188	NA	NA
UHGV-2090832_41	eggNOG-mapper	428127.EUBDOL_01518	NA	NA
UHGV-2090832_41	Structural annotation	PF10571	NA	NA
UHGV-2090832_44	Structural annotation	PF17020, NF005100	NA	NA
UHGV-2090832_45	PHROG	phrog_12650	NA	unknown function
UHGV-2090832_45	Structural annotation	NF010673	NA	NA
UHGV-2090832_47	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2090832_47	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-2090832_47	eggNOG-mapper	633135.C9WBA6_9CAUD	exonuclease activity	NA
UHGV-2090832_47	Pfam	PF08139	Prokaryotic membrane lipoprotein lipid attachment site	LPAM_1
UHGV-2090832_50	UniRef90	UniRef90_A0A2T3G2L3	Ferritin-like diiron domain-containing protein	NA
UHGV-2090832_50	eggNOG-mapper	1211844.CBLM010000023_gene991	NA	NA
UHGV-2090832_51	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2090832_51	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2090832_51	UniRef90	UniRef90_UPI0018A9B124	terminase small subunit	NA
UHGV-2090832_51	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2090832_51	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2090832_51	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2090832_51	COG	COG1783	Phage terminase large subunit	NA
UHGV-2090832_51	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2090832_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2090832_52	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2090832_52	UniRef90	UniRef90_A0A7I8E1I1	Terminase	NA
UHGV-2090832_52	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-2090832_52	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2090832_52	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2090832_52	COG	COG1783	Phage terminase large subunit	NA
UHGV-2090832_52	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2090832_53	PHROG	phrog_533	portal protein	head and packaging
UHGV-2090832_53	UniRef90	UniRef90_A0A7I8DYD1	Putative minor capsid protein, phage associated	NA
UHGV-2090832_53	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-2090832_53	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2090832_54	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2090832_54	UniRef90	UniRef90_UPI001EDF7588	phage minor capsid protein	NA
UHGV-2090832_54	eggNOG-mapper	1232449.BAHV02000010_gene2710	NA	NA
UHGV-2090832_54	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2090832_54	COG	COG2369	NA	NA
UHGV-2090832_54	Structural annotation	PF06152	NA	NA
UHGV-2090832_57	PHROG	phrog_918	NA	unknown function
UHGV-2090832_57	UniRef90	UniRef90_UPI001D09AE2C	NA	NA
UHGV-2090832_57	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-2090832_57	Pfam	PF19791	NA	DUF6275
UHGV-2090832_57	Structural annotation	PF19791	NA	NA
UHGV-2090832_58	PHROG	phrog_1048	NA	unknown function
UHGV-2090832_58	UniRef90	UniRef90_A0A417IJC2	NA	NA
UHGV-2090832_58	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-2090832_58	Pfam	PF11195	NA	DUF2829
UHGV-2090832_58	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2090832_58	Structural annotation	PF11195	NA	NA
UHGV-2090832_59	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2090832_59	UniRef90	UniRef90_A0A416ZL61	NA	NA
UHGV-2090832_59	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-2090832_59	Structural annotation	PF14359	NA	NA
UHGV-2090832_61	PHROG	phrog_9607	NA	unknown function
UHGV-2090832_61	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-2090832_63	PHROG	phrog_1758	acetyltransferase	other
UHGV-2090832_63	UniRef90	UniRef90_A0A7X8YRL4	N-acetyltransferase	NA
UHGV-2090832_63	eggNOG-mapper	658655.HMPREF0988_02567	acetyltransferase	NA
UHGV-2090832_63	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-2090832_63	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-2090832_65	PHROG	phrog_21589	NA	unknown function
UHGV-2090832_65	UniRef90	UniRef90_UPI001D09B5E0	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-2090832_65	eggNOG-mapper	431943.CKL_0478	NA	NA
UHGV-2090832_65	AcrCatalog	cluster_7454	NA	NA
UHGV-2090832_65	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-2090832_66	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-2090832_66	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-2090832_66	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-2090832_68	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2090832_68	UniRef90	UniRef90_A0A7I8DYF8	Antirepressor	NA
UHGV-2090832_68	eggNOG-mapper	1504823.CCMM01000008_gene1052	Phage regulatory protein	NA
UHGV-2090832_68	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2090832_68	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2090832_68	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2090832_68	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2090832_68	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-2090832_69	PHROG	phrog_30609	NA	unknown function
UHGV-2090832_69	Structural annotation	PF21485	NA	NA
UHGV-2090832_70	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2090832_70	UniRef90	UniRef90_UPI000E553868	phage scaffolding protein	NA
UHGV-2090832_70	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-2090832_70	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2090832_70	Structural annotation	PF06810	NA	NA
UHGV-2090832_71	PHROG	phrog_422	major head protein	head and packaging
UHGV-2090832_71	UniRef90	UniRef90_A0A7I8E542	Phage capsid protein	NA
UHGV-2090832_71	eggNOG-mapper	1411095.X5J9Z5_9CAUD	NA	NA
UHGV-2090832_71	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2090832_72	PHROG	phrog_1378	NA	unknown function
UHGV-2090832_72	UniRef90	UniRef90_T3D7L4	Putative phage domain protein	NA
UHGV-2090832_72	eggNOG-mapper	1582156.A0A0A8WFD0_9CAUD	NA	NA
UHGV-2090832_73	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2090832_74	PHROG	phrog_3366	NA	unknown function
UHGV-2090832_74	Structural annotation	PF20536	NA	NA
UHGV-2090832_75	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2090832_75	UniRef90	UniRef90_UPI0018AC663A	minor capsid protein	NA
UHGV-2090832_75	eggNOG-mapper	1120746.CCNL01000014_gene2100	Minor capsid protein	NA
UHGV-2090832_75	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2090832_75	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-2090832_76	Structural annotation	PF16807	NA	NA
UHGV-2090832_77	PHROG	phrog_3099	NA	unknown function
UHGV-2090832_77	eggNOG-mapper	33035.JPJF01000033_gene2268	NA	NA
UHGV-2090832_78	Structural annotation	PF10666	NA	NA
UHGV-2090832_79	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2090832_79	UniRef90	UniRef90_A0A7I8E2C4	Phage tail tape measure protein	NA
UHGV-2090832_79	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-2090832_79	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2090832_79	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2090832_79	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2090832_80	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2090832_80	eggNOG-mapper	552396.HMPREF0863_00268	NA	NA
UHGV-2090832_80	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2090832_81	PHROG	phrog_538	minor tail protein	tail
UHGV-2090832_81	UniRef90	UniRef90_A0A1M6B1Q8	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-2090832_81	eggNOG-mapper	411468.CLOSCI_00276	NA	NA
UHGV-2090832_81	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2090832_81	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2090832_82	PHROG	phrog_9994	NA	unknown function
UHGV-2090832_82	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-2090832_82	eggNOG-mapper	1232446.BAIE02000011_gene1583	NA	NA
UHGV-2090832_82	Structural annotation	PF20747	NA	NA
UHGV-2090832_84	PHROG	phrog_24103	NA	unknown function
UHGV-2090832_84	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA