UHGV-2092080

Genome information

Genome length 35,761 bps

CDS count 44

Completeness 99.90% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-2092080
vOTU ID	vOTU-073224
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029490\|Ga0244171_100126\|provirus_79236_114996
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.66
Jumbo phage	No

Genome content
Genome length	35,761 bps
GC content	54.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.99%
Average CDS length	769.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2092080_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2092080_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2092080_1	UniRef90	UniRef90_A0A1G5VH29	Repressor LexA	NA
UHGV-2092080_1	eggNOG-mapper	1111454.HMPREF1250_0095	Peptidase S24-like	NA
UHGV-2092080_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2092080_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2092080_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2092080_1	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2092080_2	UniRef90	UniRef90_E6MH06	HTH cro/C1-type domain-containing protein	NA
UHGV-2092080_2	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-2092080_2	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2092080_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2092080_3	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2092080_3	UniRef90	UniRef90_D9SWH3	Prophage antirepressor	NA
UHGV-2092080_3	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-2092080_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2092080_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2092080_3	COG	COG3617	Prophage antirepressor	NA
UHGV-2092080_3	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2092080_4	PHROG	phrog_7735	excisionase	integration and excision
UHGV-2092080_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2092080_4	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-2092080_5	PHROG	phrog_14367	NA	unknown function
UHGV-2092080_5	UniRef90	UniRef90_A0A1G5VJC5	LysM domain-containing protein	NA
UHGV-2092080_5	eggNOG-mapper	568816.Acin_1401	LysM domain	NA
UHGV-2092080_5	Pfam	PF01476	LysM domain	LysM
UHGV-2092080_5	COG	COG1388	LysM repeat	NA
UHGV-2092080_5	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2092080_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2092080_9	UniRef90	UniRef90_S7HTF0	Phage-type endonuclease	NA
UHGV-2092080_9	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-2092080_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2092080_9	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2092080_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2092080_9	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2092080_10	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2092080_10	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2092080_10	UniRef90	UniRef90_S7HTJ9	RecT protein	NA
UHGV-2092080_10	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-2092080_10	Pfam	PF03837	RecT family	RecT
UHGV-2092080_10	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2092080_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2092080_10	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2092080_12	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2092080_12	UniRef90	UniRef90_UPI0019412472	replication protein	NA
UHGV-2092080_12	eggNOG-mapper	1423807.BACO01000050_gene1452	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-2092080_12	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-2092080_12	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-2092080_13	PHROG	phrog_9804	NA	unknown function
UHGV-2092080_13	UniRef90	UniRef90_W9E7Y7	Inhibitor_G39P domain-containing protein	NA
UHGV-2092080_13	eggNOG-mapper	1094508.Tsac_2439	Loader and inhibitor of phage G40P	NA
UHGV-2092080_13	Structural annotation	PF11417	NA	NA
UHGV-2092080_15	PHROG	phrog_1689	nucleotide kinase	other
UHGV-2092080_15	UniRef90	UniRef90_UPI001F0F7AF9	NA	NA
UHGV-2092080_15	eggNOG-mapper	706434.HMPREF9429_00388	NA	NA
UHGV-2092080_15	Pfam	PF11753	NA	DUF3310
UHGV-2092080_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2092080_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2092080_16	UniRef90	UniRef90_UPI001645BE69	single-stranded DNA-binding protein	NA
UHGV-2092080_16	eggNOG-mapper	1111454.HMPREF1250_0520	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2092080_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2092080_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2092080_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2092080_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2092080_16	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-2092080_19	Structural annotation	NF034186	NA	NA
UHGV-2092080_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2092080_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2092080_20	UniRef90	UniRef90_A0A3F2ZSG0	Endodeoxyribonuclease RusA family protein	NA
UHGV-2092080_20	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-2092080_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2092080_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2092080_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2092080_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2092080_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2092080_22	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-2092080_23	PHROG	phrog_2655	excisionase	integration and excision
UHGV-2092080_23	UniRef90	UniRef90_C9LP91	HTH_59 domain-containing protein	NA
UHGV-2092080_23	eggNOG-mapper	592028.GCWU000321_01370	NA	NA
UHGV-2092080_23	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-2092080_23	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-2092080_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2092080_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2092080_25	UniRef90	UniRef90_UPI00096C4B2D	terminase small subunit	NA
UHGV-2092080_25	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-2092080_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2092080_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2092080_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2092080_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2092080_26	UniRef90	UniRef90_UPI001D073785	phage terminase large subunit	NA
UHGV-2092080_26	eggNOG-mapper	401526.TcarDRAFT_1283	Phage terminase large subunit (GpA)	NA
UHGV-2092080_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2092080_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2092080_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2092080_28	PHROG	phrog_156	portal protein	head and packaging
UHGV-2092080_28	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-2092080_28	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-2092080_28	Pfam	PF16510	Phage P22-like portal protein	P22_portal
UHGV-2092080_28	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-2092080_28	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-2092080_30	PHROG	phrog_334	major head protein	head and packaging
UHGV-2092080_30	UniRef90	UniRef90_UPI00138A4297	N4-gp56 family major capsid protein	NA
UHGV-2092080_30	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-2092080_30	Pfam	PF13252	NA	DUF4043
UHGV-2092080_30	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2092080_30	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2092080_32	Structural annotation	PF20387	NA	NA
UHGV-2092080_33	eggNOG-mapper	1485543.JMME01000005_gene872	NA	NA
UHGV-2092080_33	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-2092080_34	PHROG	phrog_6465	tail protein	tail
UHGV-2092080_34	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-2092080_34	COG	COG4675	Phage tail collar domain	NA
UHGV-2092080_34	Structural annotation	PF20747	NA	NA
UHGV-2092080_35	UniRef90	UniRef90_A0A1G5VKB0	Bacteriophage holin family protein	NA
UHGV-2092080_35	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-2092080_35	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2092080_35	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2092080_36	Structural annotation	PF11039, MF_00084, NF000482, COG3818	NA	NA
UHGV-2092080_37	UniRef90	UniRef90_UPI00138A01EF	Hint domain-containing protein	NA
UHGV-2092080_37	eggNOG-mapper	1485543.JMME01000020_gene776	NA	NA
UHGV-2092080_37	Pfam	PF13403	Hint domain	Hint_2
UHGV-2092080_37	Structural annotation	PF07591, NF038136, TIGR03017, COG4942	NA	NA
UHGV-2092080_39	PHROG	phrog_9854	NA	unknown function
UHGV-2092080_39	UniRef90	UniRef90_UPI001D087CF6	phage tail tip lysozyme	NA
UHGV-2092080_39	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-2092080_39	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2092080_39	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-2092080_39	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-2092080_39	Structural annotation	PF18857, PF18013	NA	NA
UHGV-2092080_40	KOfam	K07273	acm; lysozyme	NA
UHGV-2092080_40	PHROG	phrog_291	endolysin	lysis
UHGV-2092080_40	UniRef90	UniRef90_UPI001D0872FD	glycosyl hydrolase family 25	NA
UHGV-2092080_40	eggNOG-mapper	910314.HMPREF9220_0603	Glycosyl hydrolases family 25	NA
UHGV-2092080_40	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2092080_40	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2092080_40	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-2092080_41	eggNOG-mapper	568816.Acin_1823	NA	NA
UHGV-2092080_41	Structural annotation	PF10651	NA	NA
UHGV-2092080_42	PHROG	phrog_24267	NA	unknown function
UHGV-2092080_42	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-2092080_42	COG	COG4675	Phage tail collar domain	NA
UHGV-2092080_43	KOfam	K14059	int; integrase	NA
UHGV-2092080_43	PHROG	phrog_1	integrase	integration and excision
UHGV-2092080_43	UniRef90	UniRef90_UPI000404EDAD	site-specific integrase	NA
UHGV-2092080_43	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-2092080_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2092080_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2092080_43	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2092080_44	PHROG	phrog_10797	NA	unknown function
UHGV-2092080_44	UniRef90	UniRef90_A0A0X8K8T8	Glycoprotease	NA
UHGV-2092080_44	eggNOG-mapper	742743.HMPREF9453_00542	NA	NA
UHGV-2092080_44	Structural annotation	PF20132	NA	NA