UHGV-2092287

Genome information

Genome length 25,284 bps

CDS count 44

Completeness 70.04% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-2092287
vOTU ID	vOTU-036838
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029484\|Ga0244116_100109\|provirus_1_25284
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.11
Jumbo phage	No

Genome content
Genome length	25,284 bps
GC content	43.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.39%
Average CDS length	540.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2092287_1	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-2092287_1	UniRef90	UniRef90_A0A426FZI4	Phage tail tape measure protein (Fragment)	NA
UHGV-2092287_1	eggNOG-mapper	1415774.U728_1244	tail tape measure protein	NA
UHGV-2092287_1	COG	COG5283	Phage-related tail protein	NA
UHGV-2092287_2	eggNOG-mapper	411902.CLOBOL_03872	NA	NA
UHGV-2092287_3	Structural annotation	PF17388	NA	NA
UHGV-2092287_4	PHROG	phrog_2175	protein with Ig domain	other
UHGV-2092287_4	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-2092287_4	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2092287_5	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2092287_5	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2092287_5	UniRef90	UniRef90_A0A373VQE6	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2092287_5	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2092287_5	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2092287_5	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-2092287_6	Structural annotation	PF20765	NA	NA
UHGV-2092287_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2092287_7	UniRef90	UniRef90_A0A373Y1Z1	HK97 gp10 family phage protein	NA
UHGV-2092287_7	eggNOG-mapper	1220589.CD32_01275	NA	NA
UHGV-2092287_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2092287_7	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2092287_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2092287_8	UniRef90	UniRef90_A0A373XZI9	Phage head-tail adapter protein	NA
UHGV-2092287_8	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-2092287_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2092287_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2092287_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2092287_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2092287_9	PHROG	phrog_5223	neck protein	connector
UHGV-2092287_9	UniRef90	UniRef90_A0A2A8H7P3	DNA-packaging protein	NA
UHGV-2092287_9	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-2092287_9	Structural annotation	TIGR01560	NA	NA
UHGV-2092287_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-2092287_10	UniRef90	UniRef90_A0A373Y235	Phage major capsid protein	NA
UHGV-2092287_10	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2092287_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2092287_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2092287_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2092287_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2092287_11	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2092287_11	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2092287_11	UniRef90	UniRef90_A0A1C5SFD0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2092287_11	eggNOG-mapper	626523.GCWU000342_01026	Belongs to the peptidase S14 family	NA
UHGV-2092287_11	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2092287_11	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2092287_11	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2092287_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-2092287_12	UniRef90	UniRef90_A0A373XZJ2	Phage portal protein	NA
UHGV-2092287_12	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-2092287_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2092287_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2092287_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2092287_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2092287_13	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-2092287_13	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-2092287_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2092287_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2092287_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2092287_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2092287_14	PHROG	phrog_1066	NA	unknown function
UHGV-2092287_14	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-2092287_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2092287_15	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2092287_15	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-2092287_15	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-2092287_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2092287_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2092287_16	UniRef90	UniRef90_A0A1Y4RDA5	Sigma70_r4 domain-containing protein	NA
UHGV-2092287_16	eggNOG-mapper	1256908.HMPREF0373_00785	NA	NA
UHGV-2092287_16	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2092287_16	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-2092287_18	PHROG	phrog_8684	NA	unknown function
UHGV-2092287_18	UniRef90	UniRef90_A0A373XZJ5	YopX domain-containing protein	NA
UHGV-2092287_18	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-2092287_18	Pfam	PF09643	YopX protein	YopX
UHGV-2092287_18	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2092287_19	PHROG	phrog_16951	NA	unknown function
UHGV-2092287_19	UniRef90	UniRef90_A0A1C6DDN5	YopX protein	NA
UHGV-2092287_19	eggNOG-mapper	1160721.RBI_II00399	NA	NA
UHGV-2092287_20	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2092287_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2092287_20	UniRef90	UniRef90_UPI001899D561	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2092287_20	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2092287_20	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2092287_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2092287_20	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-2092287_22	eggNOG-mapper	1235792.C808_01244	NA	NA
UHGV-2092287_25	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-2092287_25	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2092287_25	UniRef90	UniRef90_R6SWZ2	SF4 helicase domain-containing protein	NA
UHGV-2092287_25	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-2092287_25	Pfam	PF13481	AAA domain	AAA_25
UHGV-2092287_25	COG	COG0305	Replicative DNA helicase	NA
UHGV-2092287_25	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-2092287_26	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2092287_26	UniRef90	UniRef90_UPI001EE2C20A	helix-turn-helix domain-containing protein	NA
UHGV-2092287_26	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-2092287_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2092287_26	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-2092287_27	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2092287_27	UniRef90	UniRef90_R6T0H0	ERCC4 domain-containing protein	NA
UHGV-2092287_27	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-2092287_27	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2092287_27	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-2092287_27	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-2092287_28	PHROG	phrog_18107	NA	unknown function
UHGV-2092287_28	eggNOG-mapper	476272.RUMHYD_01739	NA	NA
UHGV-2092287_28	Structural annotation	PF05037	NA	NA
UHGV-2092287_29	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2092287_29	UniRef90	UniRef90_A0A373XZR2	ATP-binding protein	NA
UHGV-2092287_29	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-2092287_29	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2092287_37	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2092287_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2092287_37	UniRef90	UniRef90_R6T0I0	MerR family transcriptional regulator	NA
UHGV-2092287_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2092287_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2092287_37	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-2092287_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2092287_38	UniRef90	UniRef90_R6TCY9	Transcriptional regulator	NA
UHGV-2092287_38	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2092287_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2092287_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2092287_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2092287_39	UniRef90	UniRef90_R6U4I7	DNA-binding helix-turn-helix protein	NA
UHGV-2092287_39	eggNOG-mapper	945021.TEH_08310	Helix-turn-helix XRE-family like proteins	NA
UHGV-2092287_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2092287_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2092287_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2092287_39	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2092287_41	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2092287_41	UniRef90	UniRef90_A0A373XZS2	XRE family transcriptional regulator	NA
UHGV-2092287_41	eggNOG-mapper	269799.Gmet_3438	Cupin 2, conserved barrel domain protein	NA
UHGV-2092287_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2092287_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2092287_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2092287_42	PHROG	phrog_38135	NA	unknown function
UHGV-2092287_42	UniRef90	UniRef90_R6T7M7	NA	NA
UHGV-2092287_42	eggNOG-mapper	1347369.CCAD010000035_gene1055	NA	NA
UHGV-2092287_42	Pfam	PF14020	NA	DUF4236
UHGV-2092287_42	Structural annotation	PF14020	NA	NA
UHGV-2092287_43	KOfam	K14059	int; integrase	NA
UHGV-2092287_43	PHROG	phrog_1	integrase	integration and excision
UHGV-2092287_43	UniRef90	UniRef90_A0A1H7MU61	Site-specific recombinase XerD	NA
UHGV-2092287_43	eggNOG-mapper	246199.CUS_5913	Phage integrase family	NA
UHGV-2092287_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2092287_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2092287_43	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2092287_44	KOfam	K02424	fliY, tcyA; L-cystine transport system substrate-binding protein	NA
UHGV-2092287_44	PHROG	phrog_10776	NA	unknown function
UHGV-2092287_44	UniRef90	UniRef90_W0U9K1	Bacterial extracellular solute-binding protein,family 3	NA
UHGV-2092287_44	eggNOG-mapper	1160721.RBI_II00610	Belongs to the bacterial solute-binding protein 3 family	NA
UHGV-2092287_44	Pfam	PF00497	Bacterial extracellular solute-binding proteins, family 3	SBP_bac_3
UHGV-2092287_44	COG	COG0834	ABC-type amino acid transport/signal transduction system, periplasmic component/domain	NA