UHGV-2092288

Genome information

Genome length 41,119 bps

CDS count 53

Completeness 95.31% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-2092288
vOTU ID	vOTU-066555
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029484\|Ga0244116_100178\|provirus_18154_59272
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.89
Jumbo phage	No

Genome content
Genome length	41,119 bps
GC content	59.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.74%
Average CDS length	738.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2092288_1	KOfam	K14059	int; integrase	NA
UHGV-2092288_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2092288_1	UniRef90	UniRef90_A0A3D4D8C4	Integrase	NA
UHGV-2092288_1	eggNOG-mapper	742738.HMPREF9460_00840	Belongs to the 'phage' integrase family	NA
UHGV-2092288_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2092288_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2092288_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2092288_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2092288_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2092288_2	UniRef90	UniRef90_A0A3D4D7M3	HTH cro/C1-type domain-containing protein	NA
UHGV-2092288_2	eggNOG-mapper	683837.lse_1630	Helix-turn-helix XRE-family like proteins	NA
UHGV-2092288_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2092288_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2092288_2	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-2092288_3	UniRef90	UniRef90_A0A3D4D7M9	Phage repressor protein	NA
UHGV-2092288_3	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-2092288_3	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-2092288_5	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-2092288_5	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-2092288_8	PHROG	phrog_36399	NA	unknown function
UHGV-2092288_8	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-2092288_9	PHROG	phrog_8470	NA	unknown function
UHGV-2092288_9	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-2092288_9	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-2092288_9	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2092288_9	Structural annotation	PF14284	NA	NA
UHGV-2092288_10	PHROG	phrog_15609	NA	unknown function
UHGV-2092288_10	UniRef90	UniRef90_UPI001C102D5E	NA	NA
UHGV-2092288_10	eggNOG-mapper	693746.OBV_24000	NA	NA
UHGV-2092288_10	Pfam	PF11300	NA	DUF3102
UHGV-2092288_10	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-2092288_10	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-2092288_11	Structural annotation	PF02559, MF_00667, COG0231	NA	NA
UHGV-2092288_12	PHROG	phrog_799	DNA methyltransferase	other
UHGV-2092288_12	UniRef90	UniRef90_UPI000AAF359D	SAM-dependent DNA methyltransferase	NA
UHGV-2092288_12	eggNOG-mapper	1519439.JPJG01000060_gene1874	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-2092288_12	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2092288_12	Structural annotation	PF05869, MF_01872, NF000058, COG4123	NA	NA
UHGV-2092288_14	Structural annotation	PF08271	NA	NA
UHGV-2092288_18	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-2092288_21	PHROG	phrog_9467	NA	unknown function
UHGV-2092288_21	UniRef90	UniRef90_UPI0015B3EAA7	Gp49 family protein	NA
UHGV-2092288_21	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-2092288_21	Pfam	PF13876	NA	Phage_gp49_66
UHGV-2092288_21	Pfam	PF14359	NA	DUF4406
UHGV-2092288_21	dbAPIS	APIS043	NA	NA
UHGV-2092288_21	Structural annotation	PF13876, PF14359, COG3613	NA	NA
UHGV-2092288_23	eggNOG-mapper	1519439.JPJG01000060_gene1882	NA	NA
UHGV-2092288_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2092288_24	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-2092288_24	eggNOG-mapper	693746.OBV_25240	NA	NA
UHGV-2092288_24	Structural annotation	PF01446, NF041486	NA	NA
UHGV-2092288_25	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2092288_25	eggNOG-mapper	1519439.JPJG01000060_gene1884	DNA-packaging protein gp3	NA
UHGV-2092288_25	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2092288_25	Structural annotation	PF16677	NA	NA
UHGV-2092288_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2092288_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2092288_26	UniRef90	UniRef90_A0A3D4D7N6	PBSX family phage terminase large subunit	NA
UHGV-2092288_26	eggNOG-mapper	1519439.JPJG01000060_gene1885	phage Terminase large subunit	NA
UHGV-2092288_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2092288_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2092288_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2092288_26	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2092288_27	PHROG	phrog_156	portal protein	head and packaging
UHGV-2092288_27	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-2092288_27	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-2092288_28	PHROG	phrog_30605	NA	unknown function
UHGV-2092288_29	PHROG	phrog_35275	NA	unknown function
UHGV-2092288_29	eggNOG-mapper	1519439.JPJG01000060_gene1888	NA	NA
UHGV-2092288_30	PHROG	phrog_24113	NA	unknown function
UHGV-2092288_30	eggNOG-mapper	1519439.JPJG01000060_gene1889	NA	NA
UHGV-2092288_30	Structural annotation	PF11133, COG5471	NA	NA
UHGV-2092288_31	PHROG	phrog_371	major head protein	head and packaging
UHGV-2092288_31	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-2092288_31	eggNOG-mapper	1519439.JPJG01000060_gene1890	NA	NA
UHGV-2092288_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2092288_32	PHROG	phrog_12105	NA	unknown function
UHGV-2092288_32	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-2092288_33	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2092288_33	PHROG	phrog_819	tail protein	tail
UHGV-2092288_33	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-2092288_33	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-2092288_33	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2092288_33	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2092288_33	Structural annotation	PF10651, NF033814	NA	NA
UHGV-2092288_35	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-2092288_35	UniRef90	UniRef90_A0A3D4D8F0	NA	NA
UHGV-2092288_35	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-2092288_35	Pfam	PF19789	NA	DUF6273
UHGV-2092288_35	Structural annotation	PF19789	NA	NA
UHGV-2092288_36	PHROG	phrog_27545	NA	unknown function
UHGV-2092288_36	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-2092288_36	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-2092288_36	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2092288_36	Structural annotation	PF16170	NA	NA
UHGV-2092288_37	PHROG	phrog_12105	NA	unknown function
UHGV-2092288_37	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-2092288_38	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-2092288_38	Structural annotation	PF07902, NF041249	NA	NA
UHGV-2092288_39	Structural annotation	PF18707, NF041740, COG5501	NA	NA
UHGV-2092288_41	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2092288_41	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-2092288_41	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-2092288_42	eggNOG-mapper	1519439.JPJG01000060_gene1904	NA	NA
UHGV-2092288_43	PHROG	phrog_22978	NA	unknown function
UHGV-2092288_43	UniRef90	UniRef90_A0A3D4D8G0	PBECR5 domain-containing protein	NA
UHGV-2092288_43	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-2092288_43	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-2092288_44	PHROG	phrog_937	hemolysin	other
UHGV-2092288_44	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-2092288_46	PHROG	phrog_13256	NA	unknown function
UHGV-2092288_46	eggNOG-mapper	1519439.JPJG01000060_gene1898	NA	NA
UHGV-2092288_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2092288_47	PHROG	phrog_670	endolysin	lysis
UHGV-2092288_47	UniRef90	UniRef90_A0A3D4D877	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2092288_47	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-2092288_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2092288_47	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2092288_47	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2092288_48	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-2092288_48	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2092288_48	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-2092288_50	PHROG	phrog_22984	NA	unknown function
UHGV-2092288_51	PHROG	phrog_16490	NA	unknown function
UHGV-2092288_51	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-2092288_52	Structural annotation	PF18573, NF033147	NA	NA