UHGV-2092388

Genome information

Genome length 33,173 bps

CDS count 44

Completeness 87.73% (medium-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-2092388
vOTU ID	vOTU-026875
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029497\|Ga0244216_100027\|provirus_1_33173
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.96
Jumbo phage	No

Genome content
Genome length	33,173 bps
GC content	36.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.00%
Average CDS length	704.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2092388_3	PHROG	phrog_6616	tail protein	tail
UHGV-2092388_3	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-2092388_3	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-2092388_3	COG	COG4926	Phage-related protein	NA
UHGV-2092388_3	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2092388_4	PHROG	phrog_1401	NA	unknown function
UHGV-2092388_4	UniRef90	UniRef90_UPI001D00FC65	NA	NA
UHGV-2092388_4	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-2092388_4	Structural annotation	PF07761	NA	NA
UHGV-2092388_5	PHROG	phrog_1194	NA	unknown function
UHGV-2092388_5	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2092388_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2092388_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2092388_6	UniRef90	UniRef90_A0A1I1XW41	Phage-related protein	NA
UHGV-2092388_6	eggNOG-mapper	717606.PaecuDRAFT_3132	Phage-related minor tail protein	NA
UHGV-2092388_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2092388_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2092388_7	PHROG	phrog_8355	NA	unknown function
UHGV-2092388_7	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-2092388_7	eggNOG-mapper	1151292.QEW_2424	NA	NA
UHGV-2092388_8	PHROG	phrog_8300	NA	unknown function
UHGV-2092388_8	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-2092388_8	Structural annotation	PF06896	NA	NA
UHGV-2092388_9	PHROG	phrog_820	major tail protein	tail
UHGV-2092388_9	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-2092388_9	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-2092388_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2092388_10	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2092388_10	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-2092388_10	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-2092388_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2092388_10	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2092388_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2092388_11	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2092388_11	Structural annotation	PF11114	NA	NA
UHGV-2092388_12	PHROG	phrog_8710	NA	unknown function
UHGV-2092388_12	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-2092388_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2092388_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2092388_13	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-2092388_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-2092388_15	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2092388_15	eggNOG-mapper	1121947.AUHK01000002_gene935	NA	NA
UHGV-2092388_15	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2092388_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2092388_16	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-2092388_17	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2092388_17	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-2092388_17	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-2092388_17	Pfam	PF14359	NA	DUF4406
UHGV-2092388_17	Structural annotation	PF14359	NA	NA
UHGV-2092388_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2092388_19	UniRef90	UniRef90_A0A413YU28	Minor capsid protein	NA
UHGV-2092388_19	eggNOG-mapper	1282664.H354_06636	Phage minor capsid protein 2	NA
UHGV-2092388_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2092388_19	Structural annotation	PF06152	NA	NA
UHGV-2092388_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-2092388_20	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-2092388_20	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2092388_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2092388_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2092388_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2092388_21	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-2092388_21	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-2092388_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2092388_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-2092388_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2092388_22	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-2092388_22	UniRef90	UniRef90_A0A1C5UE81	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2092388_22	eggNOG-mapper	1139219.I569_01387	Helix-turn-helix of insertion element transposase	NA
UHGV-2092388_22	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-2092388_22	Structural annotation	PF13022	NA	NA
UHGV-2092388_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2092388_23	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2092388_23	Structural annotation	PF02996	NA	NA
UHGV-2092388_24	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-2092388_24	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2092388_25	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2092388_25	UniRef90	UniRef90_A0A1C5VVJ6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2092388_25	eggNOG-mapper	1116375.VEJY3_09830	NA	NA
UHGV-2092388_25	Pfam	PF14359	NA	DUF4406
UHGV-2092388_25	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2092388_25	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-2092388_26	PHROG	phrog_15077	NA	unknown function
UHGV-2092388_26	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-2092388_26	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-2092388_26	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2092388_27	PHROG	phrog_8470	NA	unknown function
UHGV-2092388_27	UniRef90	UniRef90_UPI00164C094F	PcfJ domain-containing protein	NA
UHGV-2092388_27	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-2092388_27	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2092388_27	Structural annotation	PF14284	NA	NA
UHGV-2092388_28	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-2092388_29	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2092388_29	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2092388_29	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-2092388_29	eggNOG-mapper	1519464.HY22_13875	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2092388_29	Pfam	PF00075	RNase H	RNase_H
UHGV-2092388_29	COG	COG0328	Ribonuclease HI	NA
UHGV-2092388_29	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2092388_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2092388_30	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-2092388_30	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2092388_33	PHROG	phrog_20040	NA	unknown function
UHGV-2092388_33	eggNOG-mapper	1538644.KO02_12130	NA	NA
UHGV-2092388_34	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2092388_34	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-2092388_34	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2092388_37	Structural annotation	COG1321	NA	NA
UHGV-2092388_39	UniRef90	UniRef90_A0A356C6B4	XRE family transcriptional regulator	NA
UHGV-2092388_39	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-2092388_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2092388_39	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2092388_40	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2092388_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2092388_40	UniRef90	UniRef90_A0A413YU20	Helix-turn-helix domain-containing protein	NA
UHGV-2092388_40	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-2092388_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2092388_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2092388_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2092388_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2092388_41	PHROG	phrog_20886	NA	unknown function
UHGV-2092388_41	UniRef90	UniRef90_A0A660M5N1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2092388_41	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-2092388_41	Structural annotation	PF06114	NA	NA
UHGV-2092388_42	UniRef90	UniRef90_UPI0006C337A0	tetratricopeptide repeat protein	NA
UHGV-2092388_42	eggNOG-mapper	2754.EH55_11435	cell adhesion	NA
UHGV-2092388_42	COG	COG2369	NA	NA
UHGV-2092388_43	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2092388_43	UniRef90	UniRef90_B0MB90	Abi-like protein	NA
UHGV-2092388_43	eggNOG-mapper	411490.ANACAC_00817	Abi-like protein	NA
UHGV-2092388_43	PADLOC	AbiD	AbiD	Abi
UHGV-2092388_43	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2092388_43	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2092388_43	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2092388_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2092388_44	PHROG	phrog_95	integrase	integration and excision
UHGV-2092388_44	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-2092388_44	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-2092388_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2092388_44	Pfam	PF07508	Recombinase	Recombinase
UHGV-2092388_44	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2092388_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2092388_44	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA