UHGV-2092740

Genome information

Genome length 42,178 bps

CDS count 65

Completeness 99.90% (high-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-2092740
vOTU ID	vOTU-014505
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029494\|Ga0244011_1000034\|provirus_124316_166493
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.9
Jumbo phage	No

Genome content
Genome length	42,178 bps
GC content	41.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	91.01%
Average CDS length	594.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2092740_2	PHROG	phrog_1194	NA	unknown function
UHGV-2092740_2	UniRef90	UniRef90_A0A0B3WNQ4	NA	NA
UHGV-2092740_2	eggNOG-mapper	469596.HMPREF9488_01317	NA	NA
UHGV-2092740_2	Pfam	PF20458	NA	DUF6711
UHGV-2092740_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2092740_4	PHROG	phrog_6616	tail protein	tail
UHGV-2092740_4	UniRef90	UniRef90_R6J0A2	Peptidase S74 domain-containing protein	NA
UHGV-2092740_4	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-2092740_4	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2092740_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2092740_5	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-2092740_5	COG	COG5412	Phage-related protein	NA
UHGV-2092740_6	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-2092740_7	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-2092740_7	Pfam	PF16478	NA	DUF5055
UHGV-2092740_7	Structural annotation	PF16478	NA	NA
UHGV-2092740_8	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-2092740_8	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2092740_9	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-2092740_10	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-2092740_10	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-2092740_10	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-2092740_11	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-2092740_12	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2092740_12	UniRef90	UniRef90_A0A374HKI7	DNA-packaging protein	NA
UHGV-2092740_12	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-2092740_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2092740_12	Structural annotation	TIGR01560	NA	NA
UHGV-2092740_13	PHROG	phrog_1328	major head protein	head and packaging
UHGV-2092740_13	UniRef90	UniRef90_UPI00189F9709	NA	NA
UHGV-2092740_13	eggNOG-mapper	398512.JQKC01000052_gene2672	NA	NA
UHGV-2092740_13	Pfam	PF17236	NA	DUF5309
UHGV-2092740_13	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-2092740_15	PHROG	phrog_297	holin	lysis
UHGV-2092740_15	UniRef90	UniRef90_R5KJ92	CHAP domain./Lectin C-type domain	NA
UHGV-2092740_15	eggNOG-mapper	1179226.AJXO01000005_gene1880	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2092740_15	Pfam	PF05257	CHAP domain	CHAP
UHGV-2092740_15	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2092740_15	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-2092740_16	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2092740_16	UniRef90	UniRef90_A0A416ZL61	NA	NA
UHGV-2092740_16	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-2092740_16	Pfam	PF14359	NA	DUF4406
UHGV-2092740_16	Structural annotation	PF14359	NA	NA
UHGV-2092740_17	PHROG	phrog_443	holin	lysis
UHGV-2092740_17	UniRef90	UniRef90_UPI001C3A2610	Holin	NA
UHGV-2092740_17	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-2092740_17	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2092740_17	Structural annotation	PF16945	NA	NA
UHGV-2092740_18	PHROG	phrog_1009	NA	unknown function
UHGV-2092740_20	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2092740_20	PHROG	phrog_5073	tail fiber protein	tail
UHGV-2092740_20	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2092740_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2092740_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2092740_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2092740_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-2092740_22	UniRef90	UniRef90_A0A7X2P882	Phage portal protein	NA
UHGV-2092740_22	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2092740_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2092740_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2092740_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2092740_23	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-2092740_23	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-2092740_23	COG	COG5410	NA	NA
UHGV-2092740_23	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2092740_24	KOfam	K21528	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	NA
UHGV-2092740_24	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2092740_24	UniRef90	UniRef90_W7UU55	Resolvase	NA
UHGV-2092740_24	eggNOG-mapper	1341157.RF007C_13525	resolvase	NA
UHGV-2092740_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2092740_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2092740_24	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-2092740_25	PHROG	phrog_13890	NA	unknown function
UHGV-2092740_25	UniRef90	UniRef90_A0A413FUM2	Antitoxin	NA
UHGV-2092740_26	eggNOG-mapper	999413.HMPREF1094_04343	NA	NA
UHGV-2092740_26	Structural annotation	PF18847	NA	NA
UHGV-2092740_27	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-2092740_27	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-2092740_27	UniRef90	UniRef90_UPI0012EE6601	DNA translocase FtsK	NA
UHGV-2092740_27	eggNOG-mapper	66692.ABC2769	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-2092740_27	PADLOC	SspH_00002	SspH	SSP
UHGV-2092740_27	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-2092740_27	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-2092740_29	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-2092740_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2092740_35	PHROG	phrog_3136	NA	unknown function
UHGV-2092740_36	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2092740_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2092740_36	Structural annotation	PF01381, PF13613, NF041951, COG1476	NA	NA
UHGV-2092740_37	PHROG	phrog_8684	NA	unknown function
UHGV-2092740_37	UniRef90	UniRef90_R9KUN7	YopX domain-containing protein	NA
UHGV-2092740_37	eggNOG-mapper	397290.C810_01528	YopX protein	NA
UHGV-2092740_37	Pfam	PF09643	YopX protein	YopX
UHGV-2092740_37	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2092740_37	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2092740_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2092740_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2092740_38	UniRef90	UniRef90_A0A2V2F4S0	Class V aminotransferase	NA
UHGV-2092740_38	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-2092740_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2092740_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2092740_39	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2092740_39	PHROG	phrog_17284	NA	unknown function
UHGV-2092740_39	UniRef90	UniRef90_A0A350XVB1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2092740_39	eggNOG-mapper	1291050.JAGE01000001_gene476	C-5 cytosine-specific DNA methylase	NA
UHGV-2092740_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2092740_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2092740_39	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-2092740_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2092740_41	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2092740_41	UniRef90	UniRef90_A0A1V5ZXK1	Methyltransferase	NA
UHGV-2092740_41	eggNOG-mapper	457405.FSDG_01570	DNA methylase	NA
UHGV-2092740_41	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2092740_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2092740_41	COG	COG0863	DNA modification methylase	NA
UHGV-2092740_41	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2092740_43	PHROG	phrog_8684	NA	unknown function
UHGV-2092740_43	UniRef90	UniRef90_UPI00164D87B3	YopX family protein	NA
UHGV-2092740_43	eggNOG-mapper	40522.A8ASP1_BPA50	YopX protein	NA
UHGV-2092740_43	Pfam	PF09643	YopX protein	YopX
UHGV-2092740_43	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2092740_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2092740_44	PHROG	phrog_2999	NA	unknown function
UHGV-2092740_45	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2092740_45	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-2092740_45	eggNOG-mapper	525255.HMPREF0077_0413	NA	NA
UHGV-2092740_45	Pfam	PF06356	NA	DUF1064
UHGV-2092740_45	Structural annotation	PF06356	NA	NA
UHGV-2092740_46	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2092740_46	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2092740_46	UniRef90	UniRef90_R6JHV2	AAA domain-containing protein	NA
UHGV-2092740_46	eggNOG-mapper	411467.BACCAP_02469	Bacterial dnaA protein	NA
UHGV-2092740_46	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2092740_46	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2092740_46	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-2092740_47	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2092740_47	UniRef90	UniRef90_UPI001BDAC0BE	DNA replication protein	NA
UHGV-2092740_47	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-2092740_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2092740_47	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-2092740_48	PHROG	phrog_4973	NA	unknown function
UHGV-2092740_48	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-2092740_48	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-2092740_48	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-2092740_48	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-2092740_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2092740_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2092740_49	UniRef90	UniRef90_A0A355X5F4	Single-stranded DNA-binding protein	NA
UHGV-2092740_49	eggNOG-mapper	428125.CLOLEP_00518	Single-stranded DNA-binding protein	NA
UHGV-2092740_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2092740_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2092740_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2092740_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2092740_49	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2092740_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2092740_50	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2092740_50	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2092740_50	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2092740_51	PHROG	phrog_14970	NA	unknown function
UHGV-2092740_51	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-2092740_51	eggNOG-mapper	411469.EUBHAL_02677	double-strand break repair protein	NA
UHGV-2092740_51	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2092740_51	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2092740_54	PHROG	phrog_4433	NA	unknown function
UHGV-2092740_54	UniRef90	UniRef90_UPI0015C58C2D	NA	NA
UHGV-2092740_54	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-2092740_54	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2092740_54	Structural annotation	NF007410	NA	NA
UHGV-2092740_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2092740_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2092740_58	UniRef90	UniRef90_A0A358AUU6	Single-stranded DNA-binding protein	NA
UHGV-2092740_58	eggNOG-mapper	642492.Clole_0945	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2092740_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2092740_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2092740_58	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2092740_59	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2092740_59	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2092740_61	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2092740_61	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2092740_61	UniRef90	UniRef90_A0A0H5SHR8	HTH cro/C1-type domain-containing protein	NA
UHGV-2092740_61	eggNOG-mapper	1158601.I585_04270	Helix-turn-helix XRE-family like proteins	NA
UHGV-2092740_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2092740_61	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2092740_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2092740_62	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2092740_62	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2092740_62	UniRef90	UniRef90_A0A3R6US75	XRE family transcriptional regulator	NA
UHGV-2092740_62	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2092740_62	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2092740_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2092740_63	PHROG	phrog_87	metallo-protease	other
UHGV-2092740_63	UniRef90	UniRef90_A0A316RCR6	Peptidase_M78 domain-containing protein	NA
UHGV-2092740_63	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-2092740_63	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2092740_63	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2092740_63	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2092740_64	KOfam	K07448	mrr; restriction system protein	NA
UHGV-2092740_64	PHROG	phrog_19856	NA	unknown function
UHGV-2092740_64	UniRef90	UniRef90_A0A3C0RNY8	Restriction endonuclease	NA
UHGV-2092740_64	eggNOG-mapper	1280692.AUJL01000027_gene2151	Restriction endonuclease	NA
UHGV-2092740_64	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2092740_64	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2092740_64	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2092740_65	KOfam	K14059	int; integrase	NA
UHGV-2092740_65	PHROG	phrog_1	integrase	integration and excision
UHGV-2092740_65	UniRef90	UniRef90_A0A3D4T5B0	Tyr recombinase domain-containing protein	NA
UHGV-2092740_65	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-2092740_65	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2092740_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2092740_65	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2092740_65	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA