UHGV-2092785

Genome information

Genome length 73,965 bps

CDS count 118

Completeness 89.41% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-2092785
vOTU ID	vOTU-024577
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029452\|Ga0244083_100046\|provirus_3_73967
BioSample	SAMEA3708488
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.82
Jumbo phage	No

Genome content
Genome length	73,965 bps
GC content	45.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	118
CDS density	88.67%
Average CDS length	557.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2092785_2	UniRef90	UniRef90_UPI001C2C02C1	ubiquitin carboxyl-hydrolase	NA
UHGV-2092785_2	eggNOG-mapper	547042.BACCOPRO_02126	NA	NA
UHGV-2092785_2	PADLOC	drt-cluster337	DRT	DRT
UHGV-2092785_3	eggNOG-mapper	445970.ALIPUT_02571	NA	NA
UHGV-2092785_3	PADLOC	drt-cluster346	DRT	DRT
UHGV-2092785_7	UniRef90	UniRef90_UPI001C3951D3	DpnD/PcfM family protein	NA
UHGV-2092785_7	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-2092785_7	Structural annotation	PF14207	NA	NA
UHGV-2092785_9	PHROG	phrog_10310	NA	unknown function
UHGV-2092785_9	eggNOG-mapper	1392486.JIAF01000001_gene322	NA	NA
UHGV-2092785_16	Structural annotation	PF14207	NA	NA
UHGV-2092785_17	PHROG	phrog_11100	NA	unknown function
UHGV-2092785_32	PHROG	phrog_1485	NA	unknown function
UHGV-2092785_32	UniRef90	UniRef90_UPI001C2C3223	nucleotide modification associated domain-containing protein	NA
UHGV-2092785_32	eggNOG-mapper	240302.BN982_00203	NA	NA
UHGV-2092785_32	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-2092785_32	Structural annotation	PF07659	NA	NA
UHGV-2092785_35	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2092785_35	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2092785_35	UniRef90	UniRef90_UPI001C2C6E49	phage antirepressor KilAC domain-containing protein	NA
UHGV-2092785_35	eggNOG-mapper	203119.Cthe_2462	BRO family, N-terminal domain	NA
UHGV-2092785_35	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2092785_35	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2092785_35	COG	COG3617	Prophage antirepressor	NA
UHGV-2092785_35	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2092785_36	PHROG	phrog_799	DNA methyltransferase	other
UHGV-2092785_36	UniRef90	UniRef90_A0A413BQE0	NAD(P)-dependent oxidoreductase	NA
UHGV-2092785_36	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-2092785_36	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-2092785_36	Structural annotation	PF03848, MF_00341, NF012219, COG1255	NA	NA
UHGV-2092785_38	PHROG	phrog_953	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2092785_38	UniRef90	UniRef90_UPI000E4F84C1	NA	NA
UHGV-2092785_38	eggNOG-mapper	997884.HMPREF1068_04150	Restriction endonuclease	NA
UHGV-2092785_38	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-2092785_38	Structural annotation	PF05265	NA	NA
UHGV-2092785_39	Structural annotation	PF07509, MF_00403_A, NF003254, COG0048	NA	NA
UHGV-2092785_40	PHROG	phrog_1365	NA	unknown function
UHGV-2092785_41	PHROG	phrog_2650	NA	unknown function
UHGV-2092785_41	eggNOG-mapper	1121121.KB894304_gene3341	NA	NA
UHGV-2092785_43	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2092785_43	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2092785_43	UniRef90	UniRef90_A0A646FRN8	dUTPase domain-containing protein	NA
UHGV-2092785_43	eggNOG-mapper	592026.GCWU0000282_002542	NA	NA
UHGV-2092785_43	Pfam	PF00692	dUTPase	dUTPase
UHGV-2092785_43	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2092785_43	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-2092785_44	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2092785_44	UniRef90	UniRef90_A0A1L8CM45	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-2092785_44	eggNOG-mapper	153496.JNAB01000022_gene2638	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-2092785_44	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-2092785_44	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-2092785_46	PHROG	phrog_10156	NA	unknown function
UHGV-2092785_46	eggNOG-mapper	742727.HMPREF9447_04840	NA	NA
UHGV-2092785_47	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2092785_47	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2092785_47	UniRef90	UniRef90_UPI001C2C5599	NA	NA
UHGV-2092785_47	eggNOG-mapper	1236504.HMPREF2132_11050	Phage plasmid primase, P4 family domain protein	NA
UHGV-2092785_47	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2092785_47	Pfam	PF19263	NA	DUF5906
UHGV-2092785_47	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2092785_47	Structural annotation	PF04735, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-2092785_50	eggNOG-mapper	1236504.HMPREF2132_11155	NA	NA
UHGV-2092785_50	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-2092785_51	PHROG	phrog_64	portal protein	head and packaging
UHGV-2092785_51	UniRef90	UniRef90_UPI001C2C654D	phage portal protein	NA
UHGV-2092785_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2092785_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2092785_52	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2092785_52	UniRef90	UniRef90_A0A6A7W1V0	Terminase	NA
UHGV-2092785_52	eggNOG-mapper	1236504.HMPREF2132_11175	Terminase-like family	NA
UHGV-2092785_52	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2092785_52	COG	COG5362	Phage terminase large subunit	NA
UHGV-2092785_52	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-2092785_54	Structural annotation	PF21430	NA	NA
UHGV-2092785_55	PHROG	phrog_29	major head protein	head and packaging
UHGV-2092785_55	UniRef90	UniRef90_A0A8B2AWS5	Major capsid protein	NA
UHGV-2092785_55	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-2092785_56	eggNOG-mapper	1236504.HMPREF2132_11200	NA	NA
UHGV-2092785_56	Structural annotation	PF20449	NA	NA
UHGV-2092785_57	Structural annotation	PF13437	NA	NA
UHGV-2092785_58	PHROG	phrog_5377	NA	unknown function
UHGV-2092785_59	Structural annotation	PF06141	NA	NA
UHGV-2092785_60	Structural annotation	PF08813, TIGR01603, COG5437	NA	NA
UHGV-2092785_61	eggNOG-mapper	1236504.HMPREF2132_11225	NA	NA
UHGV-2092785_62	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2092785_62	UniRef90	UniRef90_A0A415VJ71	TMP_3 domain-containing protein	NA
UHGV-2092785_62	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-2092785_62	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2092785_62	COG	COG1511	NA	NA
UHGV-2092785_63	eggNOG-mapper	1236504.HMPREF2132_11265	NA	NA
UHGV-2092785_63	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2092785_64	PHROG	phrog_38044	NA	unknown function
UHGV-2092785_64	eggNOG-mapper	1121100.JCM6294_565	Phage minor structural protein	NA
UHGV-2092785_64	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-2092785_64	COG	COG4926	Phage-related protein	NA
UHGV-2092785_65	UniRef90	UniRef90_UPI001F431ADA	BspA family leucine-rich repeat surface protein	NA
UHGV-2092785_65	Pfam	PF03382	NA	DUF285
UHGV-2092785_65	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-2092785_65	Structural annotation	PF03382, PF16640, PF18315, NF032891	NA	NA
UHGV-2092785_67	PHROG	phrog_1501	NA	unknown function
UHGV-2092785_67	UniRef90	UniRef90_R6EVM2	NA	NA
UHGV-2092785_67	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-2092785_67	Pfam	PF18925	NA	DUF5675
UHGV-2092785_67	Structural annotation	PF18925	NA	NA
UHGV-2092785_68	UniRef90	UniRef90_UPI001F20F464	phage holin family protein	NA
UHGV-2092785_68	eggNOG-mapper	1121097.JCM15093_2703	NA	NA
UHGV-2092785_68	Structural annotation	NF035928	NA	NA
UHGV-2092785_69	eggNOG-mapper	762982.HMPREF9442_01199	NA	NA
UHGV-2092785_71	UniRef90	UniRef90_UPI001C2B78AF	helix-turn-helix domain-containing protein	NA
UHGV-2092785_71	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2092785_71	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-2092785_72	PHROG	phrog_16490	NA	unknown function
UHGV-2092785_72	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-2092785_72	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-2092785_73	PHROG	phrog_31654	NA	unknown function
UHGV-2092785_73	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-2092785_74	PHROG	phrog_28898	NA	unknown function
UHGV-2092785_74	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-2092785_74	Structural annotation	PF10781	NA	NA
UHGV-2092785_76	PHROG	phrog_38431	NA	unknown function
UHGV-2092785_76	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-2092785_76	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-2092785_77	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-2092785_80	PHROG	phrog_5781	NA	unknown function
UHGV-2092785_80	UniRef90	UniRef90_UPI001C2CB487	NA	NA
UHGV-2092785_80	eggNOG-mapper	1236504.HMPREF2132_11460	NA	NA
UHGV-2092785_80	Pfam	PF14359	NA	DUF4406
UHGV-2092785_80	Structural annotation	PF14359, MF_03036, NF003642, COG3613	NA	NA
UHGV-2092785_81	KOfam	K06941	rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]	NA
UHGV-2092785_81	PHROG	phrog_24834	NA	unknown function
UHGV-2092785_81	UniRef90	UniRef90_UPI001C2C0634	Fe-S-oxidoreductase	NA
UHGV-2092785_81	eggNOG-mapper	449673.BACSTE_02201	rRNA (adenine-C2-)-methyltransferase activity	NA
UHGV-2092785_81	COG	COG0820	Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37	NA
UHGV-2092785_81	Structural annotation	MF_01849, TIGR00048, COG0820	NA	NA
UHGV-2092785_86	PHROG	phrog_8684	NA	unknown function
UHGV-2092785_86	UniRef90	UniRef90_UPI001C2C15D1	YopX family protein	NA
UHGV-2092785_86	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-2092785_86	Pfam	PF09643	YopX protein	YopX
UHGV-2092785_86	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2092785_87	Structural annotation	PF08605, MF_01194, NF010729	NA	NA
UHGV-2092785_88	PHROG	phrog_872	NA	unknown function
UHGV-2092785_88	UniRef90	UniRef90_UPI001F1A0D8B	NA	NA
UHGV-2092785_88	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-2092785_88	dbAPIS	APIS052	NA	NA
UHGV-2092785_90	PHROG	phrog_874	NA	unknown function
UHGV-2092785_90	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-2092785_90	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2092785_91	PHROG	phrog_1374	NA	unknown function
UHGV-2092785_91	Pfam	PF10269	Transmembrane Fragile-X-F protein	Tmemb_185A
UHGV-2092785_94	PHROG	phrog_32914	NA	unknown function
UHGV-2092785_101	Structural annotation	PF10653	NA	NA
UHGV-2092785_103	Structural annotation	PF13619	NA	NA
UHGV-2092785_104	PHROG	phrog_27197	NA	unknown function
UHGV-2092785_104	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-2092785_104	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2092785_105	PHROG	phrog_4433	NA	unknown function
UHGV-2092785_105	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-2092785_105	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2092785_108	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2092785_108	UniRef90	UniRef90_UPI001C2BDF1D	NA	NA
UHGV-2092785_108	Pfam	PF19808	NA	DUF6291
UHGV-2092785_108	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2092785_108	Structural annotation	PF19808	NA	NA
UHGV-2092785_109	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2092785_109	UniRef90	UniRef90_UPI001C2BD71F	NA	NA
UHGV-2092785_109	eggNOG-mapper	762968.HMPREF9441_03005	COG NOG19098 non supervised orthologous group	NA
UHGV-2092785_109	Pfam	PF11325	NA	DUF3127
UHGV-2092785_109	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2092785_110	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-2092785_110	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2092785_110	UniRef90	UniRef90_UPI001C2BD1AC	YqaJ viral recombinase family protein	NA
UHGV-2092785_110	eggNOG-mapper	411901.BACCAC_02351	YqaJ-like viral recombinase domain	NA
UHGV-2092785_110	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2092785_110	Structural annotation	TIGR03033, COG5377	NA	NA
UHGV-2092785_111	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-2092785_111	UniRef90	UniRef90_UPI001C2CAA27	KilA-N domain-containing protein	NA
UHGV-2092785_111	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-2092785_111	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-2092785_111	Structural annotation	PF04383, NF033622	NA	NA
UHGV-2092785_112	PHROG	phrog_3657	NA	unknown function
UHGV-2092785_112	eggNOG-mapper	1211813.CAPH01000015_gene728	NA	NA
UHGV-2092785_112	Structural annotation	PF04404	NA	NA
UHGV-2092785_113	PHROG	phrog_19572	NA	unknown function
UHGV-2092785_113	UniRef90	UniRef90_UPI001C2CB9CE	NA	NA
UHGV-2092785_113	eggNOG-mapper	1227276.HMPREF9148_01119	NA	NA
UHGV-2092785_113	Pfam	PF14902	NA	DUF4494
UHGV-2092785_113	Structural annotation	PF14902	NA	NA
UHGV-2092785_117	UniRef90	UniRef90_UPI001C2B7BE2	helix-turn-helix domain-containing protein	NA
UHGV-2092785_117	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2092785_117	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA
UHGV-2092785_117	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2092785_118	UniRef90	UniRef90_UPI001180215C	helix-turn-helix domain-containing protein	NA