UHGV-2093703

Genome information

Genome length 34,884 bps

CDS count 51

Completeness 81.76% (medium-quality)

geNomad score 0.9646

Prediction confidence Confident

Genome information
Genome ID	UHGV-2093703
vOTU ID	vOTU-041812
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029471\|Ga0244196_100041\|provirus_577_45671
BioSample	SAMEA3708601
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9646
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.74
Jumbo phage	No

Genome content
Genome length	34,884 bps
GC content	44.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.20%
Average CDS length	648.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2093703_1	KOfam	K07486	K07486; transposase	NA
UHGV-2093703_1	PHROG	phrog_2199	transposase	integration and excision
UHGV-2093703_1	UniRef90	UniRef90_F3AZR2	DEDD_Tnp_IS110 domain-containing protein	NA
UHGV-2093703_1	eggNOG-mapper	575593.HMPREF0491_03063	Transposase	NA
UHGV-2093703_1	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-2093703_1	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-2093703_1	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-2093703_1	COG	COG3547	Transposase	NA
UHGV-2093703_1	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-2093703_2	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2093703_2	UniRef90	UniRef90_A0A417U0V1	BIG2 domain-containing protein	NA
UHGV-2093703_2	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2093703_2	COG	COG1361	S-layer protein MJ0795, predicted component of type IV pili-like system	NA
UHGV-2093703_4	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-2093703_5	PHROG	phrog_521	tail protein	tail
UHGV-2093703_5	UniRef90	UniRef90_A0A3R6U2T5	NA	NA
UHGV-2093703_5	eggNOG-mapper	610130.Closa_1410	NA	NA
UHGV-2093703_5	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2093703_5	COG	COG3778	NA	NA
UHGV-2093703_5	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2093703_6	PHROG	phrog_6	baseplate protein	tail
UHGV-2093703_6	UniRef90	UniRef90_A0A3R6XTC2	Baseplate J protein	NA
UHGV-2093703_6	eggNOG-mapper	610130.Closa_1409	Baseplate J-like protein	NA
UHGV-2093703_6	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2093703_6	COG	COG3299	NA	NA
UHGV-2093703_6	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2093703_7	PHROG	phrog_120	baseplate protein	tail
UHGV-2093703_7	UniRef90	UniRef90_A0A3R6X2U3	NA	NA
UHGV-2093703_7	eggNOG-mapper	610130.Closa_1408	NA	NA
UHGV-2093703_7	Pfam	PF10934	NA	DUF2634
UHGV-2093703_7	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2093703_7	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-2093703_8	UniRef90	UniRef90_A0A417U1H7	DNA helicase	NA
UHGV-2093703_8	eggNOG-mapper	1121335.Clst_0404	NA	NA
UHGV-2093703_9	PHROG	phrog_400	tail protein	tail
UHGV-2093703_9	UniRef90	UniRef90_A0A174R8Z2	NA	NA
UHGV-2093703_9	eggNOG-mapper	610130.Closa_1406	PFAM Phage late control gene D protein (GPD)	NA
UHGV-2093703_9	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-2093703_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2093703_10	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2093703_10	PHROG	phrog_380	endolysin	lysis
UHGV-2093703_10	UniRef90	UniRef90_A0A417U0U9	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2093703_10	eggNOG-mapper	610130.Closa_1405	LysM domain	NA
UHGV-2093703_10	Pfam	PF01476	LysM domain	LysM
UHGV-2093703_10	COG	COG1388	LysM repeat	NA
UHGV-2093703_10	Structural annotation	PF21821, PF05489, TIGR02126, TIGR02899, COG3499, COG1388	NA	NA
UHGV-2093703_11	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-2093703_11	UniRef90	UniRef90_D9R930	Phage tape measure protein	NA
UHGV-2093703_11	eggNOG-mapper	610130.Closa_1404	tape measure	NA
UHGV-2093703_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2093703_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2093703_11	COG	COG5281	Phage-related minor tail protein	NA
UHGV-2093703_11	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2093703_12	PHROG	phrog_10943	NA	unknown function
UHGV-2093703_12	eggNOG-mapper	931276.Cspa_c07820	NA	NA
UHGV-2093703_13	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2093703_13	UniRef90	UniRef90_A0A6N3ERQ1	Phage XkdN-like protein	NA
UHGV-2093703_13	eggNOG-mapper	1121335.Clst_0400	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2093703_13	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2093703_13	Structural annotation	PF08890, COG4518	NA	NA
UHGV-2093703_14	PHROG	phrog_365	tail protein	tail
UHGV-2093703_14	UniRef90	UniRef90_A0A3E2VMD8	Phage portal protein	NA
UHGV-2093703_14	eggNOG-mapper	610130.Closa_1401	Phage tail tube protein	NA
UHGV-2093703_14	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2093703_14	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-2093703_15	PHROG	phrog_279	tail sheath	tail
UHGV-2093703_15	UniRef90	UniRef90_A0A6N3EUR6	Phage tail sheath protein	NA
UHGV-2093703_15	eggNOG-mapper	610130.Closa_1400	Phage tail sheath C-terminal domain	NA
UHGV-2093703_15	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2093703_15	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2093703_15	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-2093703_16	PHROG	phrog_525	NA	unknown function
UHGV-2093703_16	UniRef90	UniRef90_A0A174IGV6	NA	NA
UHGV-2093703_16	eggNOG-mapper	203119.Cthe_2483	NA	NA
UHGV-2093703_16	Pfam	PF20765	NA	DUF6838
UHGV-2093703_16	Structural annotation	PF20765	NA	NA
UHGV-2093703_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2093703_17	UniRef90	UniRef90_A0A174IIP2	Bacteriophage protein	NA
UHGV-2093703_17	eggNOG-mapper	610130.Closa_1398	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2093703_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2093703_17	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-2093703_18	PHROG	phrog_615	head-tail adaptor	connector
UHGV-2093703_18	eggNOG-mapper	1121335.Clst_0394	NA	NA
UHGV-2093703_18	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2093703_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2093703_19	UniRef90	UniRef90_A0A1E3A379	Phage gp6-like head-tail connector protein	NA
UHGV-2093703_19	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-2093703_19	Structural annotation	PF05135	NA	NA
UHGV-2093703_20	PHROG	phrog_247	major head protein	head and packaging
UHGV-2093703_20	UniRef90	UniRef90_A0A3R6WDT3	Coat protein	NA
UHGV-2093703_20	eggNOG-mapper	357809.Cphy_2964	NA	NA
UHGV-2093703_20	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-2093703_20	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-2093703_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2093703_21	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-2093703_21	eggNOG-mapper	357809.Cphy_2965	Phage minor structural protein GP20	NA
UHGV-2093703_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2093703_21	Structural annotation	PF06810	NA	NA
UHGV-2093703_22	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2093703_22	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-2093703_22	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-2093703_22	Pfam	PF14359	NA	DUF4406
UHGV-2093703_22	Structural annotation	PF14359, COG3613	NA	NA
UHGV-2093703_23	PHROG	phrog_3675	NA	unknown function
UHGV-2093703_23	UniRef90	UniRef90_A0A6N3EPP2	YjcQ protein	NA
UHGV-2093703_23	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-2093703_23	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2093703_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2093703_25	UniRef90	UniRef90_A0A3R6XFN9	Phage_Mu_F domain-containing protein	NA
UHGV-2093703_25	eggNOG-mapper	203119.Cthe_2476	Phage Mu protein F like protein	NA
UHGV-2093703_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2093703_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2093703_25	COG	COG2369	NA	NA
UHGV-2093703_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-2093703_26	UniRef90	UniRef90_A0A417UH01	Phage portal protein	NA
UHGV-2093703_26	eggNOG-mapper	610130.Closa_1391	Phage portal protein, SPP1 family	NA
UHGV-2093703_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2093703_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2093703_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2093703_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2093703_27	PHROG	phrog_10250	NA	unknown function
UHGV-2093703_27	UniRef90	UniRef90_A0A417WCN0	PBSX family phage terminase large subunit	NA
UHGV-2093703_27	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-2093703_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2093703_27	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2093703_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2093703_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2093703_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2093703_28	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-2093703_28	UniRef90	UniRef90_UPI0009D78BBE	phage terminase small subunit	NA
UHGV-2093703_28	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-2093703_28	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2093703_28	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2093703_28	COG	COG5484	NA	NA
UHGV-2093703_28	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-2093703_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2093703_30	UniRef90	UniRef90_A0A417C341	RNA polymerase subunit sigma-70	NA
UHGV-2093703_30	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-2093703_30	Structural annotation	PF02996	NA	NA
UHGV-2093703_31	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-2093703_31	eggNOG-mapper	742733.HMPREF9469_02894	NA	NA
UHGV-2093703_31	Structural annotation	PF19962, COG1579	NA	NA
UHGV-2093703_34	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-2093703_35	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-2093703_38	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-2093703_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2093703_38	UniRef90	UniRef90_R5J1W1	Helicase ATP-binding domain-containing protein	NA
UHGV-2093703_38	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-2093703_38	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2093703_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2093703_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2093703_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2093703_38	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-2093703_39	KOfam	K03552	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	NA
UHGV-2093703_39	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2093703_39	UniRef90	UniRef90_R5ILM6	Holliday junction resolvase RecU	NA
UHGV-2093703_39	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-2093703_39	Pfam	PF03838	Recombination protein U	RecU
UHGV-2093703_40	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2093703_40	UniRef90	UniRef90_A0A1C5LUB6	Superfamily II helicase and inactivated derivatives	NA
UHGV-2093703_40	eggNOG-mapper	1232453.BAIF02000010_gene3340	NA	NA
UHGV-2093703_40	Pfam	PF06048	NA	DUF927
UHGV-2093703_40	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2093703_40	COG	COG5519	NA	NA
UHGV-2093703_40	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2093703_41	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2093703_41	PHROG	phrog_11992	NA	unknown function
UHGV-2093703_41	UniRef90	UniRef90_R5ILI6	ZnF_CHCC domain-containing protein	NA
UHGV-2093703_41	eggNOG-mapper	1232453.BAIF02000010_gene3339	DNA primase activity	NA
UHGV-2093703_41	PADLOC	drt-UG29	DRT	DRT
UHGV-2093703_41	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2093703_41	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2093703_41	Structural annotation	PF01807	NA	NA
UHGV-2093703_42	PHROG	phrog_18107	NA	unknown function
UHGV-2093703_42	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-2093703_42	Structural annotation	PF05037	NA	NA
UHGV-2093703_43	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2093703_43	UniRef90	UniRef90_UPI001D05CF5B	ATP-binding protein	NA
UHGV-2093703_43	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-2093703_43	Pfam	PF13479	AAA domain	AAA_24
UHGV-2093703_43	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2093703_44	eggNOG-mapper	1449050.JNLE01000005_gene3947	NA	NA
UHGV-2093703_46	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2093703_46	UniRef90	UniRef90_A0A174GZA7	Siphovirus Gp157	NA
UHGV-2093703_46	eggNOG-mapper	1449050.JNLE01000005_gene3949	Siphovirus Gp157	NA
UHGV-2093703_46	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2093703_46	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2093703_48	UniRef90	UniRef90_A0A7X8LYT2	DNA-binding protein	NA
UHGV-2093703_48	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-2093703_51	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2093703_51	UniRef90	UniRef90_A0A7U9JWI4	ORF6N domain-containing protein,ORF6C domain-containing protein	NA
UHGV-2093703_51	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-2093703_51	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2093703_51	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2093703_51	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2093703_51	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA