UHGV-2093814

Genome information

Genome length 24,397 bps

CDS count 27

Completeness 52.92% (medium-quality)

geNomad score 0.9511

Prediction confidence Confident

Genome information
Genome ID	UHGV-2093814
vOTU ID	vOTU-021772
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029447\|Ga0243899_1000362\|provirus_16335_65683
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9511
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.31
Jumbo phage	No

Genome content
Genome length	24,397 bps
GC content	48.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	90.36%
Average CDS length	820.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2093814_1	eggNOG-mapper	658659.HMPREF0983_02134	NA	NA
UHGV-2093814_2	PHROG	phrog_13787	NA	unknown function
UHGV-2093814_2	UniRef90	UniRef90_A0A410PTV7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2093814_2	eggNOG-mapper	908340.HMPREF9406_0145	NA	NA
UHGV-2093814_2	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2093814_2	Structural annotation	PF13412, MF_00959, NF006146, COG1191	NA	NA
UHGV-2093814_3	PHROG	phrog_408	NA	unknown function
UHGV-2093814_3	UniRef90	UniRef90_A0A099I6I2	DNA ligase	NA
UHGV-2093814_3	eggNOG-mapper	908340.HMPREF9406_0146	NOG23194 non supervised orthologous group	NA
UHGV-2093814_4	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2093814_4	UniRef90	UniRef90_A0A417KJR1	NA	NA
UHGV-2093814_4	eggNOG-mapper	742741.HMPREF9475_02396	NA	NA
UHGV-2093814_4	Pfam	PF10926	NA	DUF2800
UHGV-2093814_4	COG	COG2887	RecB family exonuclease	NA
UHGV-2093814_4	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2093814_5	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2093814_5	UniRef90	UniRef90_A0A373XR23	NA	NA
UHGV-2093814_5	eggNOG-mapper	742741.HMPREF9475_02395	COG NOG11396 non supervised orthologous group	NA
UHGV-2093814_5	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2093814_5	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2093814_6	eggNOG-mapper	742741.HMPREF9475_02394	NA	NA
UHGV-2093814_7	eggNOG-mapper	908340.HMPREF9406_0149	NA	NA
UHGV-2093814_8	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2093814_8	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2093814_8	UniRef90	UniRef90_H1BAR3	POLAc domain-containing protein	NA
UHGV-2093814_8	eggNOG-mapper	908340.HMPREF9406_0150	DNA polymerase	NA
UHGV-2093814_8	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2093814_8	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2093814_8	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2093814_9	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2093814_9	eggNOG-mapper	908340.HMPREF9406_0151	NA	NA
UHGV-2093814_9	Pfam	PF14359	NA	DUF4406
UHGV-2093814_9	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2093814_10	eggNOG-mapper	908340.HMPREF9406_0152	NA	NA
UHGV-2093814_11	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2093814_11	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2093814_11	UniRef90	UniRef90_A0A401LDF6	SF3 helicase domain-containing protein	NA
UHGV-2093814_11	eggNOG-mapper	742741.HMPREF9475_02389	Phage plasmid primase, P4 family	NA
UHGV-2093814_11	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2093814_11	Pfam	PF19263	NA	DUF5906
UHGV-2093814_11	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2093814_11	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2093814_11	Structural annotation	PF08706, PF05272, PF19898, MF_00974, MF_00016, NF005477, COG3378	NA	NA
UHGV-2093814_12	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2093814_12	UniRef90	UniRef90_H1BAR7	VRR-NUC domain-containing protein	NA
UHGV-2093814_12	eggNOG-mapper	742741.HMPREF9475_02388	COG NOG18350 non supervised orthologous group	NA
UHGV-2093814_12	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2093814_13	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2093814_13	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2093814_13	UniRef90	UniRef90_H1BAR8	Helicase ATP-binding domain-containing protein	NA
UHGV-2093814_13	eggNOG-mapper	742741.HMPREF9475_02387	COG COG0553 Superfamily II DNA RNA helicases, SNF2 family	NA
UHGV-2093814_13	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2093814_13	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2093814_13	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2093814_13	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-2093814_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2093814_14	UniRef90	UniRef90_A0A898FNB6	NA	NA
UHGV-2093814_14	eggNOG-mapper	742741.HMPREF9475_02386	sigma factor activity	NA
UHGV-2093814_14	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2093814_14	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2093814_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2093814_15	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2093814_15	UniRef90	UniRef90_H1BAS0	HNHc domain-containing protein	NA
UHGV-2093814_15	eggNOG-mapper	742741.HMPREF9475_02385	HNH nucleases	NA
UHGV-2093814_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2093814_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2093814_15	Structural annotation	PF01844	NA	NA
UHGV-2093814_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2093814_16	UniRef90	UniRef90_UPI00083463D6	P27 family phage terminase small subunit	NA
UHGV-2093814_16	eggNOG-mapper	908340.HMPREF9406_0158	NA	NA
UHGV-2093814_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2093814_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2093814_17	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2093814_17	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2093814_17	UniRef90	UniRef90_A0A099I3D0	Methyltransferase	NA
UHGV-2093814_17	eggNOG-mapper	908340.HMPREF9406_0159	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2093814_17	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2093814_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2093814_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2093814_17	COG	COG0863	DNA modification methylase	NA
UHGV-2093814_17	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2093814_18	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2093814_18	UniRef90	UniRef90_A0A099I6H1	Virulence	NA
UHGV-2093814_18	eggNOG-mapper	908340.HMPREF9406_0160	NA	NA
UHGV-2093814_18	AcrCatalog	cluster_14489	NA	NA
UHGV-2093814_19	PHROG	phrog_3782	NA	unknown function
UHGV-2093814_19	UniRef90	UniRef90_UPI000551F72F	NA	NA
UHGV-2093814_19	eggNOG-mapper	742741.HMPREF9475_02381	NA	NA
UHGV-2093814_19	Pfam	PF14192	NA	DUF4314
UHGV-2093814_19	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2093814_19	Structural annotation	PF14192, MF_00754, NF003018, COG0779	NA	NA
UHGV-2093814_20	PHROG	phrog_21141	NA	unknown function
UHGV-2093814_20	UniRef90	UniRef90_A0A0D0SC67	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-2093814_20	eggNOG-mapper	742741.HMPREF9475_02379	NA	NA
UHGV-2093814_20	AcrCatalog	cluster_5293	NA	NA
UHGV-2093814_21	PHROG	phrog_4709	NA	unknown function
UHGV-2093814_21	eggNOG-mapper	908340.HMPREF9406_0162	NA	NA
UHGV-2093814_21	AcrCatalog	cluster_3300	NA	NA
UHGV-2093814_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2093814_22	UniRef90	UniRef90_A0A4S2AAI1	Terminase large subunit	NA
UHGV-2093814_22	eggNOG-mapper	908340.HMPREF9406_0163	Terminase	NA
UHGV-2093814_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2093814_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2093814_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2093814_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2093814_23	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-2093814_23	PHROG	phrog_2455	NA	unknown function
UHGV-2093814_23	UniRef90	UniRef90_A8SRA2	Toxin-antitoxin system, toxin component, RelE family	NA
UHGV-2093814_23	eggNOG-mapper	411474.COPEUT_00730	addiction module toxin, RelE StbE family	NA
UHGV-2093814_23	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2093814_23	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-2093814_23	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-2093814_24	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-2093814_24	PHROG	phrog_2737	NA	unknown function
UHGV-2093814_24	UniRef90	UniRef90_B0NIQ5	Addiction module antitoxin, RelB/DinJ family	NA
UHGV-2093814_24	eggNOG-mapper	908340.HMPREF9406_0165	RelB antitoxin	NA
UHGV-2093814_24	Pfam	PF04221	RelB antitoxin	RelB
UHGV-2093814_24	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-2093814_24	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-2093814_24	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-2093814_25	UniRef90	UniRef90_A0A173SGU6	Phage portal protein, HK97 family	NA
UHGV-2093814_25	eggNOG-mapper	908340.HMPREF9406_0166	Phage portal protein, HK97 family	NA
UHGV-2093814_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2093814_26	UniRef90	UniRef90_UPI001105AC8E	YDG domain-containing protein	NA
UHGV-2093814_26	eggNOG-mapper	483218.BACPEC_00636	Belongs to the GSP D family	NA
UHGV-2093814_26	Pfam	PF18657	YDG domain	YDG
UHGV-2093814_26	COG	COG4964	Flp pilus assembly protein, secretin CpaC	NA