UHGV-2094266

Genome information

Genome length 13,837 bps

CDS count 21

Completeness 99.90% (high-quality)

geNomad score 0.9563

Prediction confidence Confident

Genome information
Genome ID	UHGV-2094266
vOTU ID	vOTU-064203
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029434\|Ga0243855_1000145\|provirus_120504_134340
BioSample	SAMN05971566
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9563
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.08
Jumbo phage	No

Genome content
Genome length	13,837 bps
GC content	40.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	77.68%
Average CDS length	514.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2094266_1	KOfam	K14059	int; integrase	NA
UHGV-2094266_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2094266_1	UniRef90	UniRef90_A0A415SCM5	Site-specific integrase	NA
UHGV-2094266_1	eggNOG-mapper	1232453.BAIF02000002_gene1269	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2094266_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2094266_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2094266_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2094266_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2094266_3	PHROG	phrog_32441	NA	unknown function
UHGV-2094266_3	UniRef90	UniRef90_A0A1C5XFE5	DnaJ domain	NA
UHGV-2094266_3	eggNOG-mapper	1298920.KI911353_gene2065	NA	NA
UHGV-2094266_4	UniRef90	UniRef90_UPI0015707C90	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2094266_8	eggNOG-mapper	411459.RUMOBE_01397	NA	NA
UHGV-2094266_9	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2094266_9	UniRef90	UniRef90_A0A415SCW5	XRE family transcriptional regulator	NA
UHGV-2094266_9	eggNOG-mapper	537013.CLOSTMETH_00281	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2094266_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2094266_9	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2094266_9	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2094266_10	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2094266_10	UniRef90	UniRef90_A0A415SCL7	GIY-YIG domain-containing protein	NA
UHGV-2094266_10	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-2094266_10	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-2094266_11	PHROG	phrog_16228	NA	unknown function
UHGV-2094266_11	UniRef90	UniRef90_R5TR28	Uma2 domain-containing protein	NA
UHGV-2094266_11	eggNOG-mapper	1232453.BAIF02000002_gene1277	Putative restriction endonuclease	NA
UHGV-2094266_11	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-2094266_11	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-2094266_11	Structural annotation	PF05685, COG4636	NA	NA
UHGV-2094266_12	PHROG	phrog_1709	NA	unknown function
UHGV-2094266_12	eggNOG-mapper	500632.CLONEX_01053	NA	NA
UHGV-2094266_13	KOfam	K03086	rpoD; RNA polymerase primary sigma factor	NA
UHGV-2094266_13	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-2094266_13	UniRef90	UniRef90_A0A3E2X224	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2094266_13	eggNOG-mapper	1232453.BAIF02000002_gene1280	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	NA
UHGV-2094266_13	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-2094266_13	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-2094266_13	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-2094266_13	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2094266_13	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2094266_13	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-2094266_13	Structural annotation	PF04545, PF04542, PF04539, MF_00963, NF006666, COG0568	NA	NA
UHGV-2094266_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2094266_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2094266_17	UniRef90	UniRef90_F7JVE2	DNA helicase	NA
UHGV-2094266_17	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-2094266_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2094266_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2094266_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-2094266_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2094266_18	PHROG	phrog_11769	NA	unknown function
UHGV-2094266_18	UniRef90	UniRef90_A0A415SCX9	Phage_rep_org_N domain-containing protein	NA
UHGV-2094266_18	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-2094266_18	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2094266_18	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2094266_18	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-2094266_19	PHROG	phrog_2113	NA	unknown function
UHGV-2094266_19	UniRef90	UniRef90_A0A3A6EZF7	HTH domain-containing protein	NA
UHGV-2094266_19	eggNOG-mapper	1298920.KI911353_gene2059	NA	NA
UHGV-2094266_19	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-2094266_20	UniRef90	UniRef90_UPI001F209DAE	polyprenyl synthetase solanesyl diphosphate synthase	NA
UHGV-2094266_20	eggNOG-mapper	592028.GCWU000321_00315	NA	NA
UHGV-2094266_20	Structural annotation	PF20063, TIGR01764	NA	NA
UHGV-2094266_21	UniRef90	UniRef90_UPI00156E2764	NA	NA
UHGV-2094266_21	eggNOG-mapper	428125.CLOLEP_03808	NA	NA
UHGV-2094266_21	Pfam	PF19553	NA	DUF6076