UHGV-2094365

Genome information

Genome length 37,522 bps

CDS count 48

Completeness 89.15% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-2094365
vOTU ID	vOTU-018168
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029445\|Ga0243741_1000550\|provirus_24169_61690
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.15% (medium-quality)
CheckV contamination	11.99%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.94
Jumbo phage	No

Genome content
Genome length	37,522 bps
GC content	42.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.78%
Average CDS length	706.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2094365_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2094365_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2094365_1	UniRef90	UniRef90_A5ZPQ0	Resolvase, N-terminal domain protein	NA
UHGV-2094365_1	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2094365_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2094365_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2094365_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2094365_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2094365_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2094365_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2094365_2	UniRef90	UniRef90_UPI000E432478	Abi family protein	NA
UHGV-2094365_2	eggNOG-mapper	411490.ANACAC_00817	Abi-like protein	NA
UHGV-2094365_2	PADLOC	AbiD	AbiD	Abi
UHGV-2094365_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2094365_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2094365_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2094365_3	PHROG	phrog_87	metallo-protease	other
UHGV-2094365_3	UniRef90	UniRef90_UPI000E449709	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2094365_3	eggNOG-mapper	411459.RUMOBE_00962	Zn peptidase	NA
UHGV-2094365_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2094365_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2094365_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2094365_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2094365_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2094365_4	UniRef90	UniRef90_UPI00073F908F	helix-turn-helix domain-containing protein	NA
UHGV-2094365_4	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2094365_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2094365_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2094365_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2094365_5	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-2094365_5	UniRef90	UniRef90_UPI00073F58F1	helix-turn-helix domain-containing protein	NA
UHGV-2094365_5	eggNOG-mapper	562743.JH976434_gene1051	Helix-turn-helix XRE-family like proteins	NA
UHGV-2094365_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2094365_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2094365_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2094365_9	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-2094365_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2094365_12	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-2094365_12	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-2094365_12	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2094365_13	UniRef90	UniRef90_A0A1C5RDL1	Ribonuclease H	NA
UHGV-2094365_13	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2094365_13	COG	COG0328	Ribonuclease HI	NA
UHGV-2094365_13	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2094365_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2094365_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2094365_15	UniRef90	UniRef90_A0A1C5REE7	Sporulation initiation inhibitor protein soj	NA
UHGV-2094365_15	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-2094365_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-2094365_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2094365_15	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2094365_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2094365_16	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2094365_16	UniRef90	UniRef90_UPI000E4E2822	ParB N-terminal domain-containing protein	NA
UHGV-2094365_16	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-2094365_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2094365_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2094365_16	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2094365_17	PHROG	phrog_17690	NA	unknown function
UHGV-2094365_17	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-2094365_17	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-2094365_19	PHROG	phrog_7566	NA	unknown function
UHGV-2094365_19	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-2094365_21	UniRef90	UniRef90_A0A173WN74	Sigma-70, region 4	NA
UHGV-2094365_21	Pfam	PF18024	Helix-turn-helix domain	HTH_50
UHGV-2094365_21	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2094365_21	Structural annotation	PF01710, NF040595	NA	NA
UHGV-2094365_22	PHROG	phrog_24490	NA	unknown function
UHGV-2094365_22	eggNOG-mapper	1235793.C809_02212	NA	NA
UHGV-2094365_23	PHROG	phrog_15198	NA	unknown function
UHGV-2094365_23	UniRef90	UniRef90_A0A2V2D7Q1	NA	NA
UHGV-2094365_23	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-2094365_23	Pfam	PF04448	NA	DUF551
UHGV-2094365_24	PHROG	phrog_6568	NA	unknown function
UHGV-2094365_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2094365_25	UniRef90	UniRef90_UPI000931D7F9	RNA polymerase subunit sigma-70	NA
UHGV-2094365_25	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-2094365_25	Structural annotation	PF02996	NA	NA
UHGV-2094365_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2094365_26	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2094365_26	UniRef90	UniRef90_UPI001D08595A	terminase small subunit	NA
UHGV-2094365_26	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-2094365_26	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2094365_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2094365_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2094365_26	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2094365_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2094365_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2094365_27	UniRef90	UniRef90_A0A352BM03	PBSX family phage terminase large subunit	NA
UHGV-2094365_27	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-2094365_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2094365_27	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2094365_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-2094365_28	UniRef90	UniRef90_A0A352BM02	Phage portal protein	NA
UHGV-2094365_28	eggNOG-mapper	999413.HMPREF1094_00220	phage minor capsid protein	NA
UHGV-2094365_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2094365_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2094365_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2094365_29	UniRef90	UniRef90_UPI001D09004C	phage minor capsid protein	NA
UHGV-2094365_29	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-2094365_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2094365_29	COG	COG2369	NA	NA
UHGV-2094365_29	Structural annotation	PF06152, PF12636	NA	NA
UHGV-2094365_30	PHROG	phrog_27009	NA	unknown function
UHGV-2094365_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2094365_31	UniRef90	UniRef90_UPI001D080C73	phage scaffolding protein	NA
UHGV-2094365_31	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-2094365_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2094365_31	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2094365_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-2094365_32	UniRef90	UniRef90_UPI00189A09FD	phage major capsid protein	NA
UHGV-2094365_32	eggNOG-mapper	999413.HMPREF1094_00215	Phage capsid family	NA
UHGV-2094365_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2094365_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2094365_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2094365_32	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2094365_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2094365_33	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2094365_33	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2094365_34	PHROG	phrog_3366	NA	unknown function
UHGV-2094365_34	Pfam	PF20536	NA	DUF6751
UHGV-2094365_34	Structural annotation	PF20536	NA	NA
UHGV-2094365_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2094365_35	UniRef90	UniRef90_UPI001D084F02	minor capsid protein	NA
UHGV-2094365_35	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2094365_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2094365_35	Structural annotation	PF11114	NA	NA
UHGV-2094365_36	PHROG	phrog_3266	tail completion	connector
UHGV-2094365_36	UniRef90	UniRef90_UPI001C86C58C	chloramphenicol resistance protein	NA
UHGV-2094365_36	eggNOG-mapper	1235792.C808_05372	NA	NA
UHGV-2094365_36	Structural annotation	PF12691	NA	NA
UHGV-2094365_37	PHROG	phrog_3099	NA	unknown function
UHGV-2094365_37	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-2094365_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2094365_38	PHROG	phrog_11299	NA	unknown function
UHGV-2094365_38	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-2094365_38	Structural annotation	PF10666	NA	NA
UHGV-2094365_39	PHROG	phrog_706	NA	unknown function
UHGV-2094365_39	UniRef90	UniRef90_UPI001D099D88	bacteriophage Gp15 family protein	NA
UHGV-2094365_39	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-2094365_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2094365_39	Structural annotation	PF06854	NA	NA
UHGV-2094365_40	PHROG	phrog_28918	NA	unknown function
UHGV-2094365_40	UniRef90	UniRef90_A0A174LLY7	Phage-related protein	NA
UHGV-2094365_40	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-2094365_40	COG	COG5412	Phage-related protein	NA
UHGV-2094365_41	PHROG	phrog_1194	NA	unknown function
UHGV-2094365_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2094365_42	PHROG	phrog_6616	tail protein	tail
UHGV-2094365_42	UniRef90	UniRef90_UPI001D07A50C	collagen-like protein	NA
UHGV-2094365_42	eggNOG-mapper	59241.E7DNB8_BPDP1	peptidoglycan catabolic process	NA
UHGV-2094365_42	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-2094365_43	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-2094365_43	PHROG	phrog_11157	NA	unknown function
UHGV-2094365_43	UniRef90	UniRef90_UPI001C0EC4DD	Ig-like domain-containing protein	NA
UHGV-2094365_43	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-2094365_43	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-2094365_43	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-2094365_43	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-2094365_43	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-2094365_43	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-2094365_44	PHROG	phrog_32322	NA	unknown function
UHGV-2094365_44	UniRef90	UniRef90_UPI001C0F3A29	PF13754 domain-containing protein	NA
UHGV-2094365_44	eggNOG-mapper	411461.DORFOR_01183	NA	NA
UHGV-2094365_44	Pfam	PF13754	NA	Big_3_4
UHGV-2094365_44	Structural annotation	PF13754	NA	NA
UHGV-2094365_45	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-2094365_48	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2094365_48	PHROG	phrog_1	integrase	integration and excision
UHGV-2094365_48	UniRef90	UniRef90_A5ZPK3	Site-specific recombinase, phage integrase family	NA
UHGV-2094365_48	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2094365_48	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2094365_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2094365_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2094365_48	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA