UHGV-2094862

Genome information

Genome length 54,937 bps

CDS count 98

Completeness 96.53% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-2094862
vOTU ID	vOTU-064922
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029488\|Ga0244072_100002\|provirus_185859_240795
BioSample	SAMEA3708477
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.26
Jumbo phage	No

Genome content
Genome length	54,937 bps
GC content	36.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	98
CDS density	88.92%
Average CDS length	501.92 bps
tRNA count	2
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2094862_1	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-2094862_1	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-2094862_1	UniRef90	UniRef90_A0A174GB16	RNA polymerase sigma factor	NA
UHGV-2094862_1	eggNOG-mapper	1449050.JNLE01000003_gene3645	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-2094862_1	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-2094862_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2094862_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2094862_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2094862_1	Structural annotation	PF04545, PF04539, MF_00962, NF006071, COG1191	NA	NA
UHGV-2094862_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2094862_2	PHROG	phrog_95	integrase	integration and excision
UHGV-2094862_2	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-2094862_2	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-2094862_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2094862_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2094862_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2094862_2	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2094862_4	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-2094862_4	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2094862_4	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-2094862_7	PHROG	phrog_9804	NA	unknown function
UHGV-2094862_7	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-2094862_7	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-2094862_7	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2094862_7	Structural annotation	PF11417	NA	NA
UHGV-2094862_9	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2094862_9	UniRef90	UniRef90_A0A2P1JTY8	DNA replication protein	NA
UHGV-2094862_9	eggNOG-mapper	1111134.HMPREF1253_0393	Transcriptional regulator	NA
UHGV-2094862_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2094862_9	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-2094862_11	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-2094862_12	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-2094862_13	KOfam	K13581	ccrM; modification methylase [EC:2.1.1.72]	NA
UHGV-2094862_13	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2094862_13	UniRef90	UniRef90_X1Q9C4	N6_N4_Mtase domain-containing protein (Fragment)	NA
UHGV-2094862_13	eggNOG-mapper	694427.Palpr_0287	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2094862_13	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2094862_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2094862_13	COG	COG0863	DNA modification methylase	NA
UHGV-2094862_17	PHROG	phrog_19106	NA	unknown function
UHGV-2094862_17	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-2094862_17	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-2094862_17	Structural annotation	TIGR01453	NA	NA
UHGV-2094862_19	PHROG	phrog_20593	NA	unknown function
UHGV-2094862_20	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-2094862_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2094862_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2094862_21	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-2094862_21	eggNOG-mapper	515620.EUBELI_01955	Single-stranded DNA-binding protein	NA
UHGV-2094862_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2094862_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2094862_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2094862_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2094862_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2094862_22	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-2094862_22	eggNOG-mapper	1408423.JHYA01000024_gene1215	NA	NA
UHGV-2094862_22	Pfam	PF07866	NA	DUF1653
UHGV-2094862_22	COG	COG4728	NA	NA
UHGV-2094862_22	Structural annotation	PF07866, COG4728	NA	NA
UHGV-2094862_25	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2094862_25	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-2094862_25	eggNOG-mapper	1294142.CINTURNW_1011	Metallo-beta-lactamase superfamily	NA
UHGV-2094862_25	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-2094862_25	dbAPIS	APIS058	NA	NA
UHGV-2094862_25	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2094862_25	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2094862_27	PHROG	phrog_25456	NA	unknown function
UHGV-2094862_29	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2094862_29	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2094862_29	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-2094862_29	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-2094862_29	Pfam	PF03837	RecT family	RecT
UHGV-2094862_29	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2094862_29	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2094862_29	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2094862_30	PHROG	phrog_2164	NA	unknown function
UHGV-2094862_31	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2094862_31	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2094862_31	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-2094862_31	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-2094862_31	Pfam	PF13476	AAA domain	AAA_23
UHGV-2094862_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2094862_31	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2094862_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2094862_33	PHROG	phrog_26861	NA	unknown function
UHGV-2094862_33	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-2094862_33	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-2094862_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2094862_33	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-2094862_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2094862_33	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-2094862_36	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2094862_36	Structural annotation	PF10552	NA	NA
UHGV-2094862_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2094862_42	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2094862_42	UniRef90	UniRef90_R7BII5	AntA domain-containing protein	NA
UHGV-2094862_42	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-2094862_42	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2094862_42	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2094862_42	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-2094862_44	PHROG	phrog_32192	NA	unknown function
UHGV-2094862_44	UniRef90	UniRef90_UPI001D0221FF	alanine-zipper protein	NA
UHGV-2094862_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2094862_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2094862_45	UniRef90	UniRef90_R7BIH5	DNA-binding helix-turn-helix protein	NA
UHGV-2094862_45	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-2094862_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2094862_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2094862_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2094862_45	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2094862_46	KOfam	K07273	acm; lysozyme	NA
UHGV-2094862_46	PHROG	phrog_6745	endolysin	lysis
UHGV-2094862_46	UniRef90	UniRef90_A0A7U9R8E5	Autolytic lysozyme	NA
UHGV-2094862_46	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-2094862_46	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2094862_46	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2094862_46	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-2094862_48	PHROG	phrog_6616	tail protein	tail
UHGV-2094862_48	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-2094862_48	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-2094862_48	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2094862_48	COG	COG4926	Phage-related protein	NA
UHGV-2094862_48	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2094862_49	Structural annotation	PF07761	NA	NA
UHGV-2094862_50	PHROG	phrog_1194	NA	unknown function
UHGV-2094862_50	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-2094862_50	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2094862_51	Structural annotation	PF08931	NA	NA
UHGV-2094862_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2094862_52	UniRef90	UniRef90_A0A8D9PG17	Prophage antirepressor	NA
UHGV-2094862_52	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-2094862_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2094862_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2094862_52	COG	COG3617	Prophage antirepressor	NA
UHGV-2094862_52	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-2094862_53	Structural annotation	PF07875	NA	NA
UHGV-2094862_54	UniRef90	UniRef90_UPI001D0E5D20	CopG family transcriptional regulator	NA
UHGV-2094862_54	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-2094862_55	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-2094862_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2094862_56	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-2094862_56	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2094862_57	PHROG	phrog_28918	NA	unknown function
UHGV-2094862_57	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-2094862_57	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-2094862_57	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2094862_57	Structural annotation	PF20155	NA	NA
UHGV-2094862_59	PHROG	phrog_36112	NA	unknown function
UHGV-2094862_59	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-2094862_59	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-2094862_59	Structural annotation	PF16478	NA	NA
UHGV-2094862_61	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-2094862_61	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2094862_62	Structural annotation	PF05657	NA	NA
UHGV-2094862_63	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-2094862_63	AcrCatalog	cluster_24841	NA	NA
UHGV-2094862_64	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-2094862_64	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2094862_65	PHROG	phrog_1129	holin	lysis
UHGV-2094862_65	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-2094862_65	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2094862_65	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2094862_65	Structural annotation	PF06946	NA	NA
UHGV-2094862_66	PHROG	phrog_1863	NA	unknown function
UHGV-2094862_66	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-2094862_67	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-2094862_68	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-2094862_68	Structural annotation	PF21169	NA	NA
UHGV-2094862_69	PHROG	phrog_544	major head protein	head and packaging
UHGV-2094862_69	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-2094862_69	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-2094862_69	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2094862_69	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2094862_71	PHROG	phrog_64	portal protein	head and packaging
UHGV-2094862_71	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-2094862_71	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2094862_71	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2094862_71	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2094862_72	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-2094862_73	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2094862_73	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2094862_73	Structural annotation	PF02996	NA	NA
UHGV-2094862_74	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2094862_74	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-2094862_74	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-2094862_74	COG	COG5410	NA	NA
UHGV-2094862_74	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2094862_80	Structural annotation	PF04466	NA	NA
UHGV-2094862_81	PHROG	phrog_28328	NA	unknown function
UHGV-2094862_82	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-2094862_82	Structural annotation	PF05225, COG2886	NA	NA
UHGV-2094862_83	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2094862_83	UniRef90	UniRef90_A0A8D9PGN5	HNH endonuclease	NA
UHGV-2094862_83	eggNOG-mapper	349521.HCH_04433	endonuclease activity	NA
UHGV-2094862_83	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2094862_83	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2094862_83	Structural annotation	PF01844	NA	NA
UHGV-2094862_84	PHROG	phrog_22444	NA	unknown function
UHGV-2094862_84	UniRef90	UniRef90_A0A5S3QIX1	Helix-turn-helix transcriptional regulator	NA
UHGV-2094862_84	eggNOG-mapper	1121422.AUMW01000042_gene1260	DnaD domain protein	NA
UHGV-2094862_84	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2094862_84	Structural annotation	PF05584, NF000243, COG0640	NA	NA
UHGV-2094862_85	Structural annotation	PF12990	NA	NA
UHGV-2094862_87	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-2094862_87	UniRef90	UniRef90_R7BGE2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2094862_87	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2094862_87	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-2094862_87	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-2094862_87	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-2094862_88	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-2094862_88	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-2094862_90	KOfam	K19090	cas5t; CRISPR-associated protein Cas5t	NA
UHGV-2094862_90	UniRef90	UniRef90_UPI0015707911	CRISPR-associated protein Cas5	NA
UHGV-2094862_90	eggNOG-mapper	1128398.Curi_c06220	CRISPR-associated protein (Cas_Cas5)	NA
UHGV-2094862_90	PADLOC	cas_Cas5t	CRISPR-associated protein Cas5, subtype I-B/TNEAP	CRISPR-CAS
UHGV-2094862_90	COG	COG1688	CRISPR/Cas system-associated protein Cas5, RAMP superfamily	NA
UHGV-2094862_90	Structural annotation	PF09704, TIGR01895, COG1688	NA	NA
UHGV-2094862_92	PHROG	phrog_1233	NA	unknown function
UHGV-2094862_92	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-2094862_92	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-2094862_92	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2094862_93	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-2094862_94	PHROG	phrog_20016	NA	unknown function
UHGV-2094862_94	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2094862_94	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2094862_94	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2094862_95	PHROG	phrog_16490	NA	unknown function
UHGV-2094862_95	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2094862_97	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-2094862_97	Structural annotation	NF033819	NA	NA