UHGV-2095318

Genome information

Genome length 27,148 bps

CDS count 40

Completeness 73.04% (medium-quality)

geNomad score 0.9426

Prediction confidence Confident

Genome information
Genome ID	UHGV-2095318
vOTU ID	vOTU-041818
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029475\|Ga0244097_100571\|provirus_5953_41798
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9426
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.94
Jumbo phage	No

Genome content
Genome length	27,148 bps
GC content	48.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	94.10%
Average CDS length	641.25 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2095318_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2095318_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2095318_1	UniRef90	UniRef90_UPI001D05C6CD	recombinase family protein	NA
UHGV-2095318_1	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-2095318_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2095318_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2095318_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2095318_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2095318_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2095318_2	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2095318_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2095318_2	UniRef90	UniRef90_UPI001D07425A	3'-5' exoribonuclease	NA
UHGV-2095318_2	eggNOG-mapper	653733.Selin_2171	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-2095318_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2095318_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2095318_2	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2095318_2	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-2095318_2	Structural annotation	PF00929, MF_00157, NF004844, COG0847	NA	NA
UHGV-2095318_3	PHROG	phrog_87	metallo-protease	other
UHGV-2095318_3	UniRef90	UniRef90_UPI001D0906D8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2095318_3	eggNOG-mapper	1123250.KB908434_gene7	Zn peptidase	NA
UHGV-2095318_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2095318_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2095318_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2095318_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2095318_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2095318_4	UniRef90	UniRef90_UPI001D08154B	helix-turn-helix transcriptional regulator	NA
UHGV-2095318_4	eggNOG-mapper	1273103.NM10_03006	sequence-specific DNA binding	NA
UHGV-2095318_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2095318_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2095318_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2095318_5	UniRef90	UniRef90_A0A346B2I2	NA	NA
UHGV-2095318_5	eggNOG-mapper	1273103.NM10_03001	NA	NA
UHGV-2095318_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2095318_7	PHROG	phrog_14367	NA	unknown function
UHGV-2095318_7	UniRef90	UniRef90_UPI001D065B32	LysM domain-containing protein	NA
UHGV-2095318_7	eggNOG-mapper	568816.Acin_1254	LysM domain	NA
UHGV-2095318_7	Pfam	PF01476	LysM domain	LysM
UHGV-2095318_7	COG	COG1388	LysM repeat	NA
UHGV-2095318_7	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2095318_9	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2095318_9	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2095318_9	UniRef90	UniRef90_UPI001D060172	AAA family ATPase	NA
UHGV-2095318_9	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-2095318_9	PADLOC	AAA_15	NA	NA
UHGV-2095318_9	Pfam	PF13476	AAA domain	AAA_23
UHGV-2095318_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2095318_9	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2095318_10	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2095318_10	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2095318_10	UniRef90	UniRef90_UPI001D097B3F	recombinase RecT	NA
UHGV-2095318_10	eggNOG-mapper	1121085.AUCI01000010_gene513	RecT family	NA
UHGV-2095318_10	Pfam	PF03837	RecT family	RecT
UHGV-2095318_10	Structural annotation	PF03837, NF007351	NA	NA
UHGV-2095318_11	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2095318_11	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2095318_11	UniRef90	UniRef90_UPI001D06240E	MBL fold metallo-hydrolase	NA
UHGV-2095318_11	eggNOG-mapper	330397.A8ATK9_9CAUD	hydrolase activity	NA
UHGV-2095318_11	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-2095318_11	dbAPIS	APIS058	NA	NA
UHGV-2095318_11	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2095318_12	PHROG	phrog_9403	NA	unknown function
UHGV-2095318_13	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2095318_13	UniRef90	UniRef90_UPI0003FCA6D4	DnaD domain protein	NA
UHGV-2095318_13	eggNOG-mapper	1273103.NM10_01164	DnaD domain protein	NA
UHGV-2095318_13	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2095318_13	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2095318_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2095318_13	Structural annotation	PF01978, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-2095318_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2095318_14	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2095318_14	UniRef90	UniRef90_UPI001D07AA17	DnaA/Hda family protein	NA
UHGV-2095318_14	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-2095318_14	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-2095318_14	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2095318_14	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2095318_15	PHROG	phrog_6568	NA	unknown function
UHGV-2095318_15	eggNOG-mapper	742733.HMPREF9469_05046	NA	NA
UHGV-2095318_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2095318_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2095318_18	UniRef90	UniRef90_UPI001D0689F9	single-stranded DNA-binding protein	NA
UHGV-2095318_18	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2095318_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2095318_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2095318_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2095318_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2095318_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2095318_19	Structural annotation	MF_00773	NA	NA
UHGV-2095318_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2095318_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2095318_20	UniRef90	UniRef90_UPI001D082351	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2095318_20	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-2095318_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2095318_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2095318_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2095318_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2095318_21	UniRef90	UniRef90_A0A346B157	RNA polymerase subunit sigma-70	NA
UHGV-2095318_21	eggNOG-mapper	1111454.HMPREF1250_0269	NA	NA
UHGV-2095318_21	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2095318_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2095318_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2095318_22	UniRef90	UniRef90_UPI001D07EF7D	HNH endonuclease	NA
UHGV-2095318_22	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-2095318_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2095318_23	PHROG	phrog_13845	NA	unknown function
UHGV-2095318_23	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-2095318_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2095318_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2095318_24	UniRef90	UniRef90_UPI000406183D	terminase large subunit	NA
UHGV-2095318_24	eggNOG-mapper	1399942.U3PBG5_9CAUD	Phage Terminase	NA
UHGV-2095318_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2095318_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2095318_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2095318_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-2095318_25	UniRef90	UniRef90_UPI0003FDC1C6	phage portal protein	NA
UHGV-2095318_25	eggNOG-mapper	742738.HMPREF9460_01364	Portal protein	NA
UHGV-2095318_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2095318_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2095318_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2095318_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2095318_26	KOfam	K06904	NA	NA
UHGV-2095318_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2095318_26	UniRef90	UniRef90_UPI000415264F	HK97 family phage prohead protease	NA
UHGV-2095318_26	eggNOG-mapper	1285586.H131_21307	Caudovirus prohead serine protease	NA
UHGV-2095318_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2095318_26	COG	COG3740	Phage head maturation protease	NA
UHGV-2095318_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2095318_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-2095318_27	UniRef90	UniRef90_UPI000400CBEC	phage major capsid protein	NA
UHGV-2095318_27	eggNOG-mapper	903814.ELI_1299	Phage capsid family	NA
UHGV-2095318_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2095318_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2095318_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2095318_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2095318_28	Structural annotation	PF01281	NA	NA
UHGV-2095318_29	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2095318_29	UniRef90	UniRef90_UPI00041E0DD1	head-tail connector protein	NA
UHGV-2095318_29	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-2095318_29	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2095318_29	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2095318_30	PHROG	phrog_25	head closure Hc1	connector
UHGV-2095318_30	UniRef90	UniRef90_UPI000415E870	phage head closure protein	NA
UHGV-2095318_30	eggNOG-mapper	1285586.H131_21292	Phage head-tail joining protein	NA
UHGV-2095318_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2095318_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2095318_30	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2095318_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2095318_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2095318_31	UniRef90	UniRef90_UPI000410849E	HK97 gp10 family phage protein	NA
UHGV-2095318_31	eggNOG-mapper	1095747.HMPREF1049_2007	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2095318_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2095318_31	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2095318_32	PHROG	phrog_525	NA	unknown function
UHGV-2095318_32	eggNOG-mapper	293826.Amet_2419	NA	NA
UHGV-2095318_32	Pfam	PF20765	NA	DUF6838
UHGV-2095318_32	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-2095318_33	PHROG	phrog_1480	tail sheath	tail
UHGV-2095318_33	UniRef90	UniRef90_A0A7X2XHA8	Phage tail sheath protein	NA
UHGV-2095318_33	eggNOG-mapper	1095747.HMPREF1049_2005	Phage tail sheath C-terminal domain	NA
UHGV-2095318_33	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2095318_33	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2095318_34	PHROG	phrog_365	tail protein	tail
UHGV-2095318_34	UniRef90	UniRef90_UPI000429BBBA	phage tail tube protein	NA
UHGV-2095318_34	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-2095318_34	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2095318_34	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2095318_35	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-2095318_35	eggNOG-mapper	632245.CLP_2608	NA	NA
UHGV-2095318_35	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-2095318_37	PHROG	phrog_7972	NA	unknown function
UHGV-2095318_37	UniRef90	UniRef90_A0A8G0NSD2	Phage tail protein	NA
UHGV-2095318_37	eggNOG-mapper	469617.FUAG_00846	tape measure	NA
UHGV-2095318_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2095318_38	PHROG	phrog_5184	NA	unknown function
UHGV-2095318_38	UniRef90	UniRef90_A0A5C0SFK8	Phage portal protein	NA
UHGV-2095318_38	eggNOG-mapper	1285586.H131_21257	LysM domain	NA
UHGV-2095318_38	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2095318_39	PHROG	phrog_400	tail protein	tail
UHGV-2095318_39	UniRef90	UniRef90_UPI000F0469E9	CHAP domain-containing protein	NA
UHGV-2095318_39	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-2095318_39	Structural annotation	PF14594, NF033848, COG4379	NA	NA